View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_26 (Length: 250)
Name: NF11405_low_26
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 48424424 - 48424188
Alignment:
| Q |
7 |
gatcttgactgggagtatccatcctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagtt |
106 |
Q |
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| T |
48424424 |
gatcttgactgggagtatccatcctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagcagtt |
48424325 |
T |
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| Q |
107 |
ctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttgga |
206 |
Q |
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| T |
48424324 |
ctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaacttgga |
48424225 |
T |
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| Q |
207 |
ttgggtcaatgtaatgacttatgaccttttcatctca |
243 |
Q |
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| T |
48424224 |
ttgggtcaatgtaatgacttatgaccttttcatctca |
48424188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 51482919 - 51482680
Alignment:
| Q |
4 |
cttgatcttgactgggagtatccatcctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagca |
103 |
Q |
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| T |
51482919 |
cttgatcttgactgggagtatccatcctcagacacagaaaaggccaactttggttcgctaatcagggaatggagagctgccgtgaccacagaatctagga |
51482820 |
T |
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| Q |
104 |
gttctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaactt |
203 |
Q |
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| T |
51482819 |
gttccggcaagccagcactgctgttatctgctgcagtgggtggctctgatcagataactccattgaagtactaccctggtcaagatgttgcaaacaactt |
51482720 |
T |
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| Q |
204 |
ggattgggtcaatgtaatgacttatgaccttttcatctca |
243 |
Q |
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| T |
51482719 |
ggattgggttaatgtaatgacctatgacctttacatctca |
51482680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 51468009 - 51467770
Alignment:
| Q |
4 |
cttgatcttgactgggagtatccatcctccgacacagataaaaccaactttggtttactcattacggagtggagagctgctgtgacccaagagtctagca |
103 |
Q |
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| T |
51468009 |
cttgatcttgattggcagtatccatcctcagacgctgaaatgaccaactttggtttactcatcaaagagtggagagctgctgtggccgcagagtctagga |
51467910 |
T |
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| Q |
104 |
gttctggcaagccgacactgctgttatctgctgccgtgggtggctctgatcagatcatctctttggaatactacccaggtcaggatattgcaaacaactt |
203 |
Q |
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|||| | ||||||| |||| ||||||||||||| |||||||||||||||||||| | | | |||||||||| ||||| ||| ||||||||||||| |
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| T |
51467909 |
gttccgacaagccggaactgttgttatctgctgcagtgggtggctctgatcagataactccactaaaatactaccctggtcaagatgttgcaaacaactt |
51467810 |
T |
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| Q |
204 |
ggattgggtcaatgtaatgacttatgaccttttcatctca |
243 |
Q |
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| T |
51467809 |
ggattgggttaatgtaatgacctatgacctttacatctca |
51467770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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