View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_27 (Length: 250)
Name: NF11405_low_27
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25307000 - 25306780
Alignment:
| Q |
1 |
ttgatttatataggaagaaacaatgttactcgttctaaggttcctgaaacagaaaagaggttcatgtgttggcctccagataacaagtcattggtttcag |
100 |
Q |
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| T |
25307000 |
ttgatttatataggaagaaacaatgttactcgttctaaggttcctgaaacagaaaagaggttcatgtgttggcctccatataacaagtcattggtttcag |
25306901 |
T |
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| Q |
101 |
aatttctaaatgctaaacagcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaacatacttaggctccttgat |
200 |
Q |
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| T |
25306900 |
aatttctaaatgctaaacaacccaacattcaagtaagttatgttttattttttttttcaagaataagtgaaaatctataaacatacttaggctccttaat |
25306801 |
T |
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| Q |
201 |
gaaaatcaatcttaacagtgg |
221 |
Q |
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| T |
25306800 |
gaaaatcaatcttaacagtgg |
25306780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 25278905 - 25278746
Alignment:
| Q |
7 |
tatataggaagaaacaatgttactcgttctaaggttcctgaaacagaaaagaggttcatgtgttggcctccagataacaagtcattggtttcagaatttc |
106 |
Q |
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| T |
25278905 |
tatataggaagaaacaatgttgctcattctaaggttcttgaaacataaaagaggttcatgt--------------aataagtcattggtttcagaatttc |
25278820 |
T |
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| Q |
107 |
taaatgctaaacagcccaacattcaagtaagttattttatatatattttttcaaggataagtgaaaatctataaaca |
183 |
Q |
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| T |
25278819 |
aaaatgctaaaaagcccaacattcaagtaagttatgttttata---tttttcaagaataagtcaaaatctataaaca |
25278746 |
T |
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