View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_29 (Length: 241)
Name: NF11405_low_29
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 38846508 - 38846291
Alignment:
| Q |
17 |
agaaagcagataaatattcgttatttgtttgaaatttttagttgccttagtttgaccctaaaagtaaatatacatgagttaaaattatgagtacaattat |
116 |
Q |
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| T |
38846508 |
agaaaacagataaatattcgttatttgtttgaaatt-------gccttagtttgaccgtaaaagtaaatatacatgagttaaaattataagtacaattat |
38846416 |
T |
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| Q |
117 |
ttttcaacaacattgtgcagaaagtaattatttgaaccgatgatataaaaatgccttcaaaatttttaattttatagatttcaaatcaagtgattttatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38846415 |
ttttcaacaacattgtgcagaaagtaattatttgaaccgatgataaaaaaatgccttcaaaatttttaattttatagatttcaaatcaagtgattttatg |
38846316 |
T |
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| Q |
217 |
taaattataatccaactgagagatt |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
38846315 |
taaattataatccaactgagagatt |
38846291 |
T |
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