View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_low_30 (Length: 241)

Name: NF11405_low_30
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_low_30
NF11405_low_30
[»] chr2 (12 HSPs)
chr2 (5-89)||(43737508-43737592)
chr2 (72-121)||(6736481-6736530)
chr2 (44-108)||(40681986-40682050)
chr2 (72-106)||(19152254-19152288)
chr2 (72-122)||(33498618-33498668)
chr2 (72-122)||(44605158-44605208)
chr2 (72-121)||(41047865-41047914)
chr2 (37-121)||(4882680-4882764)
chr2 (72-104)||(11781582-11781614)
chr2 (43-119)||(13273008-13273084)
chr2 (37-121)||(14268717-14268801)
chr2 (72-108)||(18570976-18571012)
[»] chr6 (11 HSPs)
chr6 (72-119)||(17422274-17422321)
chr6 (43-121)||(10760832-10760909)
chr6 (72-114)||(34625732-34625774)
chr6 (38-106)||(2140466-2140534)
chr6 (79-120)||(7625114-7625155)
chr6 (72-105)||(33076415-33076448)
chr6 (72-108)||(2493433-2493469)
chr6 (74-106)||(6294557-6294589)
chr6 (66-106)||(7112784-7112824)
chr6 (66-106)||(8781321-8781361)
chr6 (72-108)||(34598542-34598578)
[»] chr3 (9 HSPs)
chr3 (37-113)||(16192734-16192810)
chr3 (72-120)||(25074781-25074829)
chr3 (72-105)||(18180546-18180579)
chr3 (72-104)||(21110482-21110514)
chr3 (72-112)||(27858340-27858380)
chr3 (72-104)||(32166202-32166234)
chr3 (72-116)||(35990544-35990588)
chr3 (72-120)||(41319329-41319377)
chr3 (72-104)||(49636845-49636877)
[»] chr1 (9 HSPs)
chr1 (72-120)||(26462664-26462712)
chr1 (72-104)||(48317605-48317637)
chr1 (54-104)||(41017405-41017455)
chr1 (72-121)||(21057774-21057823)
chr1 (79-120)||(22907365-22907406)
chr1 (72-105)||(43328474-43328507)
chr1 (72-105)||(47126273-47126306)
chr1 (72-104)||(29230073-29230105)
chr1 (66-106)||(40747786-40747826)
[»] chr8 (4 HSPs)
chr8 (75-121)||(4114225-4114271)
chr8 (72-121)||(11815820-11815869)
chr8 (75-104)||(34259817-34259846)
chr8 (72-104)||(2517115-2517147)
[»] chr7 (3 HSPs)
chr7 (66-104)||(13803676-13803714)
chr7 (72-101)||(31837762-31837791)
chr7 (72-108)||(38134425-38134461)
[»] chr5 (8 HSPs)
chr5 (72-121)||(9878051-9878100)
chr5 (72-120)||(28296320-28296368)
chr5 (72-119)||(11596474-11596521)
chr5 (66-120)||(38749576-38749630)
chr5 (72-121)||(4206317-4206366)
chr5 (72-120)||(2039868-2039916)
chr5 (70-118)||(39424635-39424683)
chr5 (72-104)||(39828474-39828506)
[»] chr4 (13 HSPs)
chr4 (72-109)||(20119948-20119985)
chr4 (72-108)||(31277043-31277079)
chr4 (72-108)||(32369931-32369967)
chr4 (79-120)||(7012058-7012099)
chr4 (72-105)||(35212746-35212779)
chr4 (72-104)||(2976702-2976734)
chr4 (60-104)||(3458172-3458216)
chr4 (74-106)||(4178754-4178786)
chr4 (72-120)||(5654610-5654658)
chr4 (72-104)||(8457933-8457965)
chr4 (72-108)||(18513260-18513296)
chr4 (54-102)||(18783987-18784035)
chr4 (72-108)||(27096020-27096056)
[»] scaffold0022 (1 HSPs)
scaffold0022 (50-120)||(99885-99955)
[»] scaffold0147 (1 HSPs)
scaffold0147 (60-104)||(37670-37714)
[»] scaffold0036 (1 HSPs)
scaffold0036 (37-113)||(9731-9807)
[»] scaffold0024 (1 HSPs)
scaffold0024 (72-108)||(151419-151455)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 43737592 - 43737508
Alignment:
Q  5 tgtatccgaatccgacacatgtcatgtcatctgtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43737592 tgtatccgaatccgacacatgtcatgtcatctgtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcat 43737508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 6736530 - 6736481
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||||||| ||| |||||||||||||| ||| ||||||||||||    
T  6736530 tacattcaattattccatattctcaaattattaccggtgtcgacgtgtca 6736481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 40682050 - 40681986
Alignment:
Q  44 acaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||||||||||||  ||| ||  || |||||| |||||| |||||||||||||||||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcgg 40681986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 19152288 - 19152254
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatc 106  Q
    |||||||||||||||||||||||||||||| ||||    
T  19152288 tacattcaattatttcattttctcaaattaatatc 19152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 33498668 - 33498618
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtcat 122  Q
    |||||||||||||| ||||||||||||||||||   | |||||||||||||    
T  33498668 tacattcaattattccattttctcaaattattacttgtgtcgacgtgtcat 33498618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 44605158 - 44605208
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtcat 122  Q
    |||||| |||||| | |||||||||||||||||| ||||| ||||||||||    
T  44605158 tacattgaattatgttattttctcaaattattattggcgttgacgtgtcat 44605208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 41047914 - 41047865
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||||||| || ||| ||||||||||||| | ||||||||||||    
T  41047914 tacattcaattattccactttttcaaattattatcagtgtcgacgtgtca 41047865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 4882680 - 4882764
Alignment:
Q  37 gtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||||| |||||||||| |||  | ||| |||| | |||||| ||||||| |||||| |||| |||  |||||||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaataattagcggtatcgacgtgtca 4882764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 11781582 - 11781614
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||| |||||||||||||||||||||||    
T  11781582 tacattcaaatatttcattttctcaaattatta 11781614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 13273008 - 13273084
Alignment:
Q  43 gacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgt 119  Q
    |||||||||||||||   |||| ||||| || ||| |||||| | |||||||||||| ||||| || ||||||||||    
T  13273008 gacaccaacacgacactgacatttataattagattgaattatataattttctcaaatgattatgggtgtcgacgtgt 13273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 14268717 - 14268801
Alignment:
Q  37 gtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    ||||||||||||| ||| ||| | |||  ||| | ||| ||||||||  ||||||||||||||||||| ||| || |||||||||    
T  14268717 gtgtctgacaccatcacaacaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttgacgtgtca 14268801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 18571012 - 18570976
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||| |||||| |||||||||||||||||||||||    
T  18571012 tacattgaattatgtcattttctcaaattattatcgg 18570976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 17422274 - 17422321
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgt 119  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgt 17422321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 10760832 - 10760909
Alignment:
Q  43 gacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    ||||||||||||||||| ||| || | | |||||||||| || ||||||||||||||||||||| | ||||||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtca 10760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 34625774 - 34625732
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcga 114  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  34625774 tacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 2140466 - 2140534
Alignment:
Q  38 tgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatc 106  Q
    |||| ||||||||||||| ||  | |||||||  |||||| |||||| |||||||||||||||||||||    
T  2140466 tgtccgacaccaacacgatattgatatgtatagttacattgaattatgtcattttctcaaattattatc 2140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 7625155 - 7625114
Alignment:
Q  79 aattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| ||||||||||||||||||||| | |||||||||||    
T  7625155 aattatatcattttctcaaattattatccgtgtcgacgtgtc 7625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 33076448 - 33076415
Alignment:
Q  72 tacattcaattatttcattttctcaaattattat 105  Q
    ||||||||||||| ||||||||||||||||||||    
T  33076448 tacattcaattatgtcattttctcaaattattat 33076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 2493433 - 2493469
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  2493433 tacattcaattatgtcattttgtcaaattattatcgg 2493469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 6294557 - 6294589
Alignment:
Q  74 cattcaattatttcattttctcaaattattatc 106  Q
    |||||||||| ||||||||||||||||||||||    
T  6294557 cattcaattaattcattttctcaaattattatc 6294589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 7112824 - 7112784
Alignment:
Q  66 tataaatacattcaattatttcattttctcaaattattatc 106  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  7112824 tataattacatttaattatttcattttctcaaattactatc 7112784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 8781321 - 8781361
Alignment:
Q  66 tataaatacattcaattatttcattttctcaaattattatc 106  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  8781321 tataattacatttaattatttcattttctcaaattactatc 8781361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 34598578 - 34598542
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  34598578 tacatccaattaattcattttctcaaattattatcgg 34598542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 16192734 - 16192810
Alignment:
Q  37 gtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcg 113  Q
    |||||||||||| ||||||||||||||  ||||| |||| | |||||| | ||||||||||||||||| ||| ||||    
T  16192734 gtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 25074829 - 25074781
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||| |||||||| ||||||||||||||||||||||| |||| ||||||    
T  25074829 tacactcaattatgtcattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 18180579 - 18180546
Alignment:
Q  72 tacattcaattatttcattttctcaaattattat 105  Q
    |||||| |||||||||||||||||||||||||||    
T  18180579 tacatttaattatttcattttctcaaattattat 18180546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 21110482 - 21110514
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||||||| |||||||||||||||||||    
T  21110482 tacattcaattatgtcattttctcaaattatta 21110514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 27858380 - 27858340
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtc 112  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  27858380 tacattcaattaggtcattttctcaaattattatcagcgtc 27858340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32166202 - 32166234
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||||||| |||||||||||||||||||    
T  32166202 tacattcaattatgtcattttctcaaattatta 32166234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 35990544 - 35990588
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacg 116  Q
    |||||||| |||||| ||||||||||||||||||| | |||||||    
T  35990544 tacattcagttattttattttctcaaattattatcagtgtcgacg 35990588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 41319329 - 41319377
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| |||||| ||||||| |||||||||||| || |||||||||||    
T  41319329 tacattgaattatgtcattttttcaaattattattggtgtcgacgtgtc 41319377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 49636845 - 49636877
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    |||||||||||| ||||||||||||||||||||    
T  49636845 tacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 26462664 - 26462712
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  26462664 tacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc 26462712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 48317637 - 48317605
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    |||||||||||||||||||||||||||||||||    
T  48317637 tacattcaattatttcattttctcaaattatta 48317605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 41017405 - 41017455
Alignment:
Q  54 gacatcaacatgtataaatacattcaattatttcattttctcaaattatta 104  Q
    |||| |||||| ||||| |||||| |||||| |||||||||||||||||||    
T  41017405 gacaccaacatatataattacattaaattatgtcattttctcaaattatta 41017455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 21057823 - 21057774
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    ||||||||||||| | ||||||| ||||||||| ||| ||||||||||||    
T  21057823 tacattcaattatgttattttctaaaattattagcggtgtcgacgtgtca 21057774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 22907365 - 22907406
Alignment:
Q  79 aattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| | ||||||||||||||||| |||||||||||||||    
T  22907365 aattatataattttctcaaattattaacggcgtcgacgtgtc 22907406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 43328507 - 43328474
Alignment:
Q  72 tacattcaattatttcattttctcaaattattat 105  Q
    |||||| |||||||||||||||||||||||||||    
T  43328507 tacattaaattatttcattttctcaaattattat 43328474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 47126306 - 47126273
Alignment:
Q  72 tacattcaattatttcattttctcaaattattat 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  47126306 tacattcaattatttcattttcttaaattattat 47126273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 29230105 - 29230073
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||||||| |||||||||||||||||||    
T  29230105 tacattcaattatgtcattttctcaaattatta 29230073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 40747786 - 40747826
Alignment:
Q  66 tataaatacattcaattatttcattttctcaaattattatc 106  Q
    ||||| |||||| |||||| |||||||||||||||||||||    
T  40747786 tataattacattgaattatgtcattttctcaaattattatc 40747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 4114225 - 4114271
Alignment:
Q  75 attcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||| |||||||||||||||||||||||| | |||||||||    
T  4114225 attcaattatgtcattttctcaaattattatcggcattgacgtgtca 4114271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 11815869 - 11815820
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||||||  ||||||||||||||||||| || ||| ||||||||    
T  11815869 tacattcaattataacattttctcaaattattattggtgtcaacgtgtca 11815820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 34259817 - 34259846
Alignment:
Q  75 attcaattatttcattttctcaaattatta 104  Q
    ||||||||||||||||||||||||||||||    
T  34259817 attcaattatttcattttctcaaattatta 34259846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 2517147 - 2517115
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    |||||||||||| ||||||||||||||||||||    
T  2517147 tacattcaattaattcattttctcaaattatta 2517115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 13803714 - 13803676
Alignment:
Q  66 tataaatacattcaattatttcattttctcaaattatta 104  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  13803714 tataaatacactcaattatttcattttctcaaattatta 13803676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 31837791 - 31837762
Alignment:
Q  72 tacattcaattatttcattttctcaaatta 101  Q
    ||||||||||||||||||||||||||||||    
T  31837791 tacattcaattatttcattttctcaaatta 31837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 38134425 - 38134461
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||| |||||| |||||||||||||||||||||||    
T  38134425 tacattgaattatgtcattttctcaaattattatcgg 38134461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 9878051 - 9878100
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    |||||||||||| ||||| ||||||||||||||| || ||||||||||||    
T  9878051 tacattcaattaattcatattctcaaattattattggtgtcgacgtgtca 9878100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 28296368 - 28296320
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| |||||| ||||||||||||||||||||||| |||||| ||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgacttgtc 28296320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 11596474 - 11596521
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgt 119  Q
    |||||| |||||| |||||||||||||||||||||||  |||||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 38749576 - 38749630
Alignment:
Q  66 tataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    ||||| |||||| |||||| ||||||| ||||||||||||||| |||||| ||||    
T  38749576 tataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtc 38749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 4206366 - 4206317
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtca 121  Q
    ||||||||| ||||| ||||||||||||||||| ||| || |||||||||    
T  4206366 tacattcaaatattttattttctcaaattattaacggtgttgacgtgtca 4206317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 2039868 - 2039916
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| ||| || ||||||||||||||||||| ||| |||||||||||    
T  2039868 tacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtc 2039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 39424683 - 39424635
Alignment:
Q  70 aatacattcaattatttcattttctcaaattattatcggcgtcgacgtg 118  Q
    |||||||| ||| || |||||||||||||||||||| || |||||||||    
T  39424683 aatacattgaatcatgtcattttctcaaattattattggtgtcgacgtg 39424635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 39828506 - 39828474
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    |||||||||||||||||| ||||||||||||||    
T  39828506 tacattcaattatttcatattctcaaattatta 39828474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 20119985 - 20119948
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggc 109  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20119985 tacattaaattatttcattttctcaaattattatcggc 20119948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 31277043 - 31277079
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31277043 tacattcaattagttcattttctcaaattattatcgg 31277079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32369931 - 32369967
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32369931 tacattcaattaattcattttctcaaattattatcgg 32369967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 7012099 - 7012058
Alignment:
Q  79 aattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| ||||||||||||||||||||||| |||| ||||||    
T  7012099 aattatgtcattttctcaaattattatcggtgtcggcgtgtc 7012058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 35212746 - 35212779
Alignment:
Q  72 tacattcaattatttcattttctcaaattattat 105  Q
    ||||||||||||||| ||||||||||||||||||    
T  35212746 tacattcaattatttaattttctcaaattattat 35212779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 2976734 - 2976702
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||||||| |||||||||||||||||||    
T  2976734 tacattcaattatgtcattttctcaaattatta 2976702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 3458172 - 3458216
Alignment:
Q  60 aacatgtataaatacattcaattatttcattttctcaaattatta 104  Q
    |||| |||||| |||||||||||||||||||||||| | ||||||    
T  3458172 aacacgtataattacattcaattatttcattttctccatttatta 3458216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 4178786 - 4178754
Alignment:
Q  74 cattcaattatttcattttctcaaattattatc 106  Q
    |||| ||||||||||||||||||||||||||||    
T  4178786 cattaaattatttcattttctcaaattattatc 4178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 5654610 - 5654658
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||| |||||| ||||||||||||||||||||| | |||||| ||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 8457965 - 8457933
Alignment:
Q  72 tacattcaattatttcattttctcaaattatta 104  Q
    ||||||||||||| |||||||||||||||||||    
T  8457965 tacattcaattatgtcattttctcaaattatta 8457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 18513260 - 18513296
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||| |||||| |||||||||||||||||||||||    
T  18513260 tacattgaattatgtcattttctcaaattattatcgg 18513296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 18784035 - 18783987
Alignment:
Q  54 gacatcaacatgtataaatacattcaattatttcattttctcaaattat 102  Q
    |||| ||||| || ||| |||||||||||| ||||||||||||||||||    
T  18784035 gacaccaacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 27096020 - 27096056
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  27096020 tacattcaattatgtcattttgtcaaattattatcgg 27096056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 99955 - 99885
Alignment:
Q  50 acacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcgacgtgtc 120  Q
    |||||||| |||||  ||||| |||||| |||||| | ||||||| ||||||||||||| |||||| ||||    
T  99955 acacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtc 99885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 37670 - 37714
Alignment:
Q  60 aacatgtataaatacattcaattatttcattttctcaaattatta 104  Q
    |||| |||||| |||||||||||||||||||||||| | ||||||    
T  37670 aacacgtataattacattcaattatttcattttctccatttatta 37714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 9731 - 9807
Alignment:
Q  37 gtgtctgacaccaacacgacatcaacatgtataaatacattcaattatttcattttctcaaattattatcggcgtcg 113  Q
    ||||||||||||||||||||| | |||  ||||| |||| | |||||  | |||||||||||||||||  |||||||    
T  9731 gtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttctcaaattattagtggcgtcg 9807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 151419 - 151455
Alignment:
Q  72 tacattcaattatttcattttctcaaattattatcgg 108  Q
    |||||| |||||||| |||||||||||||||||||||    
T  151419 tacatttaattattttattttctcaaattattatcgg 151455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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