View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11405_low_35 (Length: 224)
Name: NF11405_low_35
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 38875492 - 38875289
Alignment:
| Q |
12 |
tgagatgaactgttgacaagtgagaatagtatgcaagtgtatgtttggttccacttttgggagaaaacataattgatttagaagtgtagaattgattttg |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38875492 |
tgagaagaactgttgacaagtgagaatagtatgcaagtgtatgtttggttctacttttgggagaaaacataattgatttagaagtgtagaattgattttg |
38875393 |
T |
|
| Q |
112 |
a--------aattttctagaatagaattgattttgccttccgaattgtttataagttataacttgaagctataatttggagcttacatctctatagctga |
203 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38875392 |
acatgtttgaattttcttgaatagaattgattttgccttccgaattgattataaattataacttgaagctataatttggagcttacatctctatagctga |
38875293 |
T |
|
| Q |
204 |
cttt |
207 |
Q |
| |
|
|||| |
|
|
| T |
38875292 |
cttt |
38875289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 35495150 - 35495216
Alignment:
| Q |
46 |
aagtgtatgtttggttccacttttgggagaaaacataattgatt-tagaagtgtagaattgattttga |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||| | || |||||||| || |||||||||||||||||||| |
|
|
| T |
35495150 |
aagtgtatgtttggttccactttt-ggagcacccaaaattgattctacaagtgtagaattgattttga |
35495216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 3845305 - 3845241
Alignment:
| Q |
48 |
gtgtatgtttggttccacttttgggagaaaacataattgatt-tagaagtgtagaattgattttga |
112 |
Q |
| |
|
|||||||||||||||||||||| |||| || || |||||||| |||| |||||||||||||||||| |
|
|
| T |
3845305 |
gtgtatgtttggttccactttt-ggagtaaccaaaattgattctagaggtgtagaattgattttga |
3845241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 3654788 - 3654724
Alignment:
| Q |
46 |
aagtgtatgtttggttccacttttgggagaaaacataattgatt-tagaagtgtagaattgatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3654788 |
aagtgtatgtttggttccactttt-ggaggaggcataattgattctagcagtgtagaattgatttt |
3654724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 29240647 - 29240581
Alignment:
| Q |
46 |
aagtgtatgtttggttccacttttgggagaaaacataattgatt-tagaagtgtagaattgattttga |
112 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||| |||| ||||| |||||||||||| |
|
|
| T |
29240647 |
aagtgtatgtttggttccacttttggg-ggaatcaaaattgattctagaggtgtaaaattgattttga |
29240581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 15050183 - 15050248
Alignment:
| Q |
46 |
aagtgtatgtttggttccacttttgggagaaaacataattgatt-tagaagtgtagaattgattttga |
112 |
Q |
| |
|
||||||||||||||||||||||| |||| | || |||||||| |||||||| |||||||||||||| |
|
|
| T |
15050183 |
aagtgtatgtttggttccacttt--ggaggagccaaaattgattctagaagtgaagaattgattttga |
15050248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University