View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_38 (Length: 205)
Name: NF11405_low_38
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_38 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 34293280 - 34293101
Alignment:
| Q |
18 |
agagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcaga |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293280 |
agagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcaga |
34293181 |
T |
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| Q |
118 |
gtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcattattgatgtccatct |
197 |
Q |
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| T |
34293180 |
gtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcattattgacatccatct |
34293101 |
T |
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Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 24494938 - 24495117
Alignment:
| Q |
18 |
agagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcaga |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494938 |
agagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcaga |
24495037 |
T |
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| Q |
118 |
gtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcattattgatgtccatct |
197 |
Q |
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| T |
24495038 |
gtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcattattgacatccatct |
24495117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 24486601 - 24486783
Alignment:
| Q |
15 |
cagagagaacgaatgccttgaaagaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttc |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24486601 |
cagagagaacgaatgccttgagagaatcatgccacgcgcgaggtgcttgtctcaaaccatatatagctttcttaagcttgcaaacatgttgtggaagttc |
24486700 |
T |
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| Q |
115 |
agagtgaatgaaccctggcggttgctgcatgtagacattttcagttaattttccttgtaaaaaggcattattgatgtccatct |
197 |
Q |
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| T |
24486701 |
agagtgaatgaaccctggcggttgctgcatgtagacatcttcagttaattttccttgtaaaaaggcattattgacatccatct |
24486783 |
T |
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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 59037 - 59182
Alignment:
| Q |
38 |
gaatcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggtt |
137 |
Q |
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||||||||||| || ||||||| || | ||||||||| || |||||||| || || |||| ||| || |||| |||||| || || || ||||| || | |
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| T |
59037 |
gaatcatgccatgcacgaggtgcctgccacaaaccataaattgctttcttgagcttacaaatatgatgaggaaattcagaatggataaaacctgggggct |
59136 |
T |
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| Q |
138 |
gctgcatgtagacattttcagttaattttccttgtaaaaaggcatt |
183 |
Q |
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||||||| || |||| ||||| |||||||||||| || |||||||| |
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| T |
59137 |
gctgcatatacacatcttcagataattttccttgcaagaaggcatt |
59182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 81833 - 81949
Alignment:
| Q |
40 |
atcatgccacgcgcgaggtgtttgtctcaaaccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgc |
139 |
Q |
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||||||||| || ||||| || || || || ||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| |
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| T |
81833 |
atcatgccatgctcgaggagtctgccttaatccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgt |
81932 |
T |
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| Q |
140 |
tgcatgtagacattttc |
156 |
Q |
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| T |
81933 |
tccatgaaaacattttc |
81949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 32323656 - 32323741
Alignment:
| Q |
71 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttc |
156 |
Q |
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||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| |
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| T |
32323656 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttc |
32323741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 18728692 - 18728777
Alignment:
| Q |
71 |
ccatatatagctttcttaagtttgcaaacatgttgtggaagttcagagtgaatgaaccctggcggttgctgcatgtagacattttc |
156 |
Q |
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||||||||||| ||||| |||||||||||||| | |||| |||||| |||||||| || || ||||| | |||| | |||||||| |
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| T |
18728692 |
ccatatatagccttcttgagtttgcaaacatgattaggaaattcagaatgaatgaaaccaggtggttgttccatgaaaacattttc |
18728777 |
T |
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