View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_5 (Length: 522)
Name: NF11405_low_5
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 33448001 - 33447530
Alignment:
| Q |
19 |
gatactccctggaggagaaatctgatctgtggtaacaccatctccaaacttgagcaagcaataacaatcctttatcctatgaagaccaggtggttccatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33448001 |
gatactccctggaggagaaatctgatctgtggtaacaccatctccaaacttgagcaagcaataacaatcctttatcctatgaagaccaggtggttccatc |
33447902 |
T |
|
| Q |
119 |
gtcatgttcttaaaataaggtggctcgtgaatgtaggtggagtttggatgccatgaatatagagttgaagcaggaactgaaagcctatcccacataggat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33447901 |
gtcatgttcttaaaataaggtggctcgtgaatgtaggtggagtttggatcccatgaatagagagttgaagcaggaactgaaagcctatcccacataggat |
33447802 |
T |
|
| Q |
219 |
tgccctttgtaatagtctcataaatgctcttgaacatgtcaggcaatacataagtttgaagagcctatatgcgtgtaacaagaaatatacatgtcaaagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447801 |
tgccctttgtaatagtctcataaatgctcttgaacatgtcaggcaatacataagtttgaagagcctatatgcgtgtaacaagaaatatacatgtcaaagt |
33447702 |
T |
|
| Q |
319 |
ctaattattaaatgatattcagagtaaattaacaatataacattgatctcatagcttagtttctgnnnnnnnctacctttgaaacctcttcattacttgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
33447701 |
ctaattattaaatgatattcagagtaaattaacaatattacattgatctcatagcttaatttctgtttttttctacctttgaaacctcttcattacttgg |
33447602 |
T |
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| Q |
419 |
ccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctcttcatagaagttgatgtc |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33447601 |
ccagatatcttttaggtacacatcccttccattctttcctcttcctaggggctcttcatagaagttgatgtc |
33447530 |
T |
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