View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_13 (Length: 298)
Name: NF11406_high_13
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 26629821 - 26629559
Alignment:
| Q |
18 |
aagtgtgctgaggtgactgaacgtgttctggctgcgtgctacaaagctttaagtgatcatcatgttctgctcgaaggaactcttttgaagcctaacatgg |
117 |
Q |
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| T |
26629821 |
aagtgcgctgatgtaacagaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaagcctaatatgg |
26629722 |
T |
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| Q |
118 |
taacccccggtttagattctcaaaaagttgcccctgaagttatagctgaatataccgttaaggccttgcagcgaactgttccggctgcagttcctgctgt |
217 |
Q |
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| T |
26629721 |
ttacaccaggatcagattctcctaaagttgctcctgaggttatagcccaacacaccgtccgagcattgttgagaaccgttcctgccgcggttcctgctat |
26629622 |
T |
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| Q |
218 |
tgtgttcttgtctggtggacagagcgaggaggaggcaacactcaacctcaatgccatgaacaa |
280 |
Q |
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| T |
26629621 |
agttttcttgtctggtggacaaagtgaagaggaagcatctgttaaccttaatgcaatgaacaa |
26629559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 29237331 - 29237147
Alignment:
| Q |
90 |
gaaggaactcttttgaagcctaacatggtaacccccggtttagattctcaaaaagttgcccctgaagttatagctgaatataccgttaaggccttgcagc |
189 |
Q |
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| T |
29237331 |
gaaggcactctcttgaagcctaacatggttacccctggatctgatgcaccaaaggttgcacccgaggttgttgctgagcacaccgttagagctttgcaga |
29237232 |
T |
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| Q |
190 |
gaactgttccggctgcagttcctgctgttgtgttcttgtctggtggacagagcgaggaggaggcaacactcaacctcaatgccat |
274 |
Q |
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| T |
29237231 |
gaaccgtacctgctgcagtcccagctgttgttttcttgtctggtggacagagtgaggaagaggccagcgtcaacctcaacgccat |
29237147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 42028140 - 42028178
Alignment:
| Q |
15 |
aacaagtgtgctgaggtgactgaacgtgttctggctgcg |
53 |
Q |
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| T |
42028140 |
aacaagtgtgctgaggtgactgaacgtgttctggctgcg |
42028178 |
T |
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