View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_high_18 (Length: 249)

Name: NF11406_high_18
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_high_18
NF11406_high_18
[»] chr8 (6 HSPs)
chr8 (1-239)||(9984484-9984722)
chr8 (172-233)||(25004005-25004066)
chr8 (172-237)||(25336134-25336199)
chr8 (172-237)||(4844434-4844499)
chr8 (172-237)||(5557133-5557198)
chr8 (172-237)||(20811030-20811095)
[»] chr6 (5 HSPs)
chr6 (4-153)||(14679404-14679553)
chr6 (172-237)||(31113641-31113706)
chr6 (172-237)||(5131350-5131415)
chr6 (172-227)||(34256213-34256268)
chr6 (185-237)||(28144411-28144463)
[»] chr3 (11 HSPs)
chr3 (172-237)||(5835285-5835350)
chr3 (174-237)||(19440726-19440789)
chr3 (172-237)||(2747085-2747150)
chr3 (172-233)||(5938394-5938455)
chr3 (172-237)||(18111100-18111165)
chr3 (172-237)||(19359880-19359945)
chr3 (172-237)||(28034347-28034412)
chr3 (172-237)||(37489383-37489448)
chr3 (172-227)||(14521669-14521724)
chr3 (173-239)||(7782843-7782909)
chr3 (174-239)||(27170136-27170201)
[»] chr4 (10 HSPs)
chr4 (184-239)||(24627379-24627434)
chr4 (172-237)||(1505348-1505413)
chr4 (172-237)||(13701966-13702031)
chr4 (172-237)||(13712459-13712524)
chr4 (182-239)||(31663886-31663943)
chr4 (172-237)||(2895155-2895220)
chr4 (172-237)||(5908506-5908571)
chr4 (172-219)||(1604728-1604775)
chr4 (184-226)||(20349574-20349616)
chr4 (184-237)||(6735753-6735806)
[»] chr2 (8 HSPs)
chr2 (172-237)||(31347395-31347460)
chr2 (172-227)||(18010920-18010975)
chr2 (18-153)||(38211207-38211341)
chr2 (172-237)||(31314654-31314719)
chr2 (41-153)||(29742169-29742279)
chr2 (172-219)||(29747154-29747201)
chr2 (183-239)||(29742302-29742358)
chr2 (166-226)||(38211352-38211411)
[»] chr1 (11 HSPs)
chr1 (172-237)||(7898999-7899064)
chr1 (172-237)||(15088270-15088335)
chr1 (172-237)||(22210878-22210943)
chr1 (172-237)||(22207315-22207380)
chr1 (172-237)||(22219628-22219693)
chr1 (185-237)||(44193472-44193524)
chr1 (172-216)||(14115575-14115619)
chr1 (184-239)||(17914278-17914333)
chr1 (172-238)||(14150132-14150198)
chr1 (185-226)||(7064051-7064092)
chr1 (172-237)||(51843952-51844017)
[»] scaffold0046 (1 HSPs)
scaffold0046 (175-237)||(89852-89914)
[»] scaffold0158 (2 HSPs)
scaffold0158 (172-237)||(1-66)
scaffold0158 (196-237)||(37457-37498)
[»] chr7 (7 HSPs)
chr7 (172-237)||(19802257-19802322)
chr7 (172-237)||(21959220-21959285)
chr7 (172-237)||(42786513-42786578)
chr7 (172-237)||(48477408-48477473)
chr7 (172-239)||(3737871-3737938)
chr7 (172-219)||(4340553-4340600)
chr7 (184-227)||(20920359-20920402)
[»] chr5 (2 HSPs)
chr5 (172-237)||(41527887-41527952)
chr5 (183-221)||(19078724-19078762)
[»] scaffold0043 (1 HSPs)
scaffold0043 (173-237)||(70138-70202)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9984722 - 9984484
Alignment:
Q  1 tgctaacgtgatataactgtcaaatacatatatctgatacatatatgaaaccataagaaataatctatactagttcgacacgtgcatacgaagataagtc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9984722 tgctaacttgatataactgtcaaatacatatatctgatacatatatgaaaccataagaaataatctatactagttcgacacgtgcatatgaagataagtc 9984623  T
Q  101 attcagcctcctatattgtccttccttgccaagaacaacatgctgatttgaaaagnnnnnnnnngggattgggggtgagataggatgtctcagcgagttc 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||| || || |||||  ||||||    
T  9984622 attcaacctcctatattgtccttccttgccaagaacaacatgctgatttgaaaagaaaaaaaaagggtttgggggtgagacagaatatctcaatgagttc 9984523  T
Q  201 cacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  9984522 cacctatcctaggctgtagacaatctcaaggaatctatg 9984484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 25004066 - 25004005
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaa 233  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  25004066 ggggtgagacagaatgtctcagtgagttccacctatcctaggctgtaggcaatctcagggaa 25004005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 25336134 - 25336199
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||| ||| |||||||| ||||||||    
T  25336134 ggggtgagacaggatgtcccagtgagttccacctatcctaggctataggcaatctcagggaaccta 25336199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 4844499 - 4844434
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||| | ||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  4844499 ggggtgagacaggatgccgcagtgagttccacctatcctaggttgtaggcaatctcagggaaccta 4844434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 5557133 - 5557198
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  5557133 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 5557198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 20811095 - 20811030
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| || ||||||||| ||||||||||||||||||| ||||| ||||||||  |||||||    
T  20811095 ggggtgagacagaatgtctcagtgagttccacctatcctaggttgtaggcaatctcagtgaaccta 20811030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 14679404 - 14679553
Alignment:
Q  4 taacgtgatataactgtcaaatacatatatctgatacatatatgaaaccataagaaataatctatactagttcgacacgtgcatacgaagataagtcatt 103  Q
    |||| ||||| |||| ||||||||||| || |||||||||| |||||||||||||||||||||| |||||| ||||||||| ||| |||||| || ||||    
T  14679404 taacttgatacaactatcaaatacataaatatgatacatatctgaaaccataagaaataatctaaactagtacgacacgtggatatgaagatgagccatt 14679503  T
Q  104 cagcctcctatattgtccttccttgccaagaacaacatgctgatttgaaa 153  Q
    |||||| ||  |||||| ||| |||||| ||||||| |||| ||||||||    
T  14679504 cagcctactgcattgtctttcattgccacgaacaacttgctaatttgaaa 14679553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 31113706 - 31113641
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  31113706 ggggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctcaaggaaccta 31113641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 5131415 - 5131350
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||| ||||| |||||||  ||||||||    
T  5131415 ggggtgagacaagatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaaccta 5131350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 34256268 - 34256213
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctc 227  Q
    ||||||||| |  ||| ||||| ||||||||||||||||||||||||| |||||||    
T  34256268 ggggtgagacaaaatgcctcagtgagttccacctatcctaggctgtaggcaatctc 34256213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 28144411 - 28144463
Alignment:
Q  185 atgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| ||||||||||||| |||| |||||| |||||||  ||||||||    
T  28144411 atgtctcagtgagttccacctatactagactgtaggcaatctcggggaaccta 28144463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 5835285 - 5835350
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||    
T  5835285 ggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatctcagggaaccta 5835350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 19440726 - 19440789
Alignment:
Q  174 ggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  19440726 ggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctcaaggaaccta 19440789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 2747150 - 2747085
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  2747150 ggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagggaaccta 2747085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 5938394 - 5938455
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaa 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||| ||||    
T  5938394 ggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatttcagggaa 5938455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 18111100 - 18111165
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||| ||||| |||| ||| ||||||||    
T  18111100 ggggtgagacatgatgtctcagtgagttccacctatcctaggttgtaggcaatatcagggaaccta 18111165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 19359945 - 19359880
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  19359945 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 19359880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 28034347 - 28034412
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| || |||||||||||||||| ||| | |||||||||||||||||    
T  28034347 ggggtgagacaagatgtctcagtgaattccacctatcctaggttgttggcaatctcaaggaaccta 28034412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 37489383 - 37489448
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||| | ||||||||||||||||||| ||||| |||||||| | ||||||    
T  37489383 ggggtgagacaagatgtctcggtgagttccacctatcctaggttgtaggcaatctcaggaaaccta 37489448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 14521724 - 14521669
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctc 227  Q
    ||||||||| |  |||||| || ||||||||||||||||||||||||| |||||||    
T  14521724 ggggtgagacaaaatgtcttagtgagttccacctatcctaggctgtaggcaatctc 14521669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 7782843 - 7782909
Alignment:
Q  173 gggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    |||||||| | ||||||| || ||||||||||||||||| ||| ||| |||||||  ||||||||||    
T  7782843 gggtgagacacgatgtcttagtgagttccacctatcctaagctataggcaatctcggggaacctatg 7782909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 27170136 - 27170201
Alignment:
Q  174 ggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    ||||||| | |||||||||| |||||||| ||||| |||| || || ||||||| |||||||||||    
T  27170136 ggtgagacatgatgtctcagtgagttccatctatcataggttgaaggcaatctctaggaacctatg 27170201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 24627379 - 24627434
Alignment:
Q  184 gatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  24627379 gatgtctcagcgagttccacctatcctaggatgtaggcaatctcagggaacctatg 24627434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 1505348 - 1505413
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | ||||||| || ||||||||||||||||||| ||||| |||||||| ||||||||    
T  1505348 ggggtgagacaagatgtcttagtgagttccacctatcctaggttgtaggcaatctcagggaaccta 1505413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 13701966 - 13702031
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||  |||||||| | ||||||    
T  13701966 ggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaaccta 13702031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 13712459 - 13712524
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||  |||||||| | ||||||    
T  13712459 ggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaaccta 13712524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 31663943 - 31663886
Alignment:
Q  182 aggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    ||||| |||||| ||||||||||||||||||| ||||| |||||||||| ||||||||    
T  31663943 aggatatctcagtgagttccacctatcctaggttgtagacaatctcaagaaacctatg 31663886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 2895220 - 2895155
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| ||| |||  ||||||||    
T  2895220 ggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaaccta 2895155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 5908506 - 5908571
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| ||| |||  ||||||||    
T  5908506 ggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaaccta 5908571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 1604775 - 1604728
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtag 219  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| |||||    
T  1604775 ggggtgagacaggaggtctcagtgagttccacctatcctaggttgtag 1604728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 20349616 - 20349574
Alignment:
Q  184 gatgtctcagcgagttccacctatcctaggctgtagccaatct 226  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||    
T  20349616 gatgtctcagtgagttccacctatactaggctgtaggcaatct 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 6735806 - 6735753
Alignment:
Q  184 gatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    |||||||||| ||||||||||||||||| |||||||  ||||| | ||||||||    
T  6735806 gatgtctcagtgagttccacctatcctaagctgtaggaaatcttagggaaccta 6735753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 31347460 - 31347395
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||  |||||||    
T  31347460 ggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagagaaccta 31347395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 18010920 - 18010975
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctc 227  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| || |||||||    
T  18010920 ggggtgagacaggatgtctcagtgagttccacctatcctaggctgcaggcaatctc 18010975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 38211207 - 38211341
Alignment:
Q  18 tgtcaaatacatatatctgatacatatatgaaaccataagaaataatctatactagttcgacacgtgcatacgaagataagtcattcagcctcctatatt 117  Q
    ||||||||||||  |||| ||||||||    || |||||||||  ||| | |||||| |||||| |||||| |||||||||||||||| |||| | | ||    
T  38211207 tgtcaaatacatgcatctaatacatatgaagaagcataagaaaccatccaaactagtacgacacatgcatatgaagataagtcattcaacctcttgt-tt 38211305  T
Q  118 gtccttccttgccaagaacaacatgctgatttgaaa 153  Q
    ||| |||||||||| ||||||| ||||||| |||||    
T  38211306 gtctttccttgccacgaacaacctgctgatctgaaa 38211341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 31314654 - 31314719
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | ||||| |||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  31314654 ggggtgagacatgatgtttcagtgagttccacctatcctaggttgtaggcaatctcagggaaccta 31314719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 29742169 - 29742279
Alignment:
Q  41 atatatgaaaccataagaaataatctatactagttcgacacgtgcatacgaagataagtcattcagcctcctatattgtccttccttgccaagaacaaca 140  Q
    |||| ||||| |||||||  | ||||| |||||| |||||  |||||| || ||||||||||||| |||  | ||||||| | ||||||||||||||||     
T  29742169 atatttgaaatcataagagttcatctaaactagtacgaca--tgcatatgatgataagtcattcaaccttttgtattgtcttcccttgccaagaacaacc 29742266  T
Q  141 tgctgatttgaaa 153  Q
    | |||||||||||    
T  29742267 tactgatttgaaa 29742279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 29747154 - 29747201
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtag 219  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| |||||    
T  29747154 ggggtgagacaggatgtctcagtgagttccacatatcctaggttgtag 29747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 29742302 - 29742358
Alignment:
Q  183 ggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    |||| |||||| |||||||||||||  |||| ||||| |||||||| ||||||||||    
T  29742302 ggatatctcagtgagttccacctattttaggttgtaggcaatctcagggaacctatg 29742358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 38211352 - 38211411
Alignment:
Q  166 ggattgggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatct 226  Q
    ||||||||| ||||| ||||| |||||| ||||||||||||||||| | ||||| ||||||    
T  38211352 ggattgggg-tgagacaggatctctcagtgagttccacctatcctaagttgtaggcaatct 38211411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 7898999 - 7899064
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  7898999 ggggtgagacaagatgtctcagtgagttccacctatcctagattgtaggcaatctcaaggaaccta 7899064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 15088270 - 15088335
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||    
T  15088270 ggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaaccta 15088335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 22210878 - 22210943
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||    
T  22210878 ggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaaccta 22210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 22207315 - 22207380
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||  || ||||||||    
T  22207315 ggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaattgcagggaaccta 22207380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 22219628 - 22219693
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |||||||||||| ||||| ||||||||||||| ||||| ||||| || ||||||||    
T  22219628 ggggtgagacaggatgtctcagtgagttgcacctatcctaggttgtaggcaatcgcagggaaccta 22219693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 44193524 - 44193472
Alignment:
Q  185 atgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||| | ||||||||||||||||||| ||||| |||||||||||||||||    
T  44193524 atgtctcggtgagttccacctatcctaggttgtaggcaatctcaaggaaccta 44193472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 14115619 - 14115575
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctg 216  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||    
T  14115619 ggggtgagacaagatgtctcagcgcgttccacctatcctaggctg 14115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 17914278 - 17914333
Alignment:
Q  184 gatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    ||||||| || ||||||||||||||||||  ||||| ||| |||||||||||||||    
T  17914278 gatgtcttagtgagttccacctatcctagaatgtaggcaacctcaaggaacctatg 17914333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 14150198 - 14150132
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctat 238  Q
    ||||||||| | |||||||| | |||||||||||||||||  |||||| |||||||  |||||||||    
T  14150198 ggggtgagacatgatgtctcggtgagttccacctatcctaaactgtaggcaatctcggggaacctat 14150132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 7064051 - 7064092
Alignment:
Q  185 atgtctcagcgagttccacctatcctaggctgtagccaatct 226  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||    
T  7064051 atgtctcagtgagttccacctatcctaggttgtaggcaatct 7064092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 51843952 - 51844017
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| |||||||||||||| || | ||||| |||||||| ||| ||||    
T  51843952 ggggtgagacatgatgtctcagtgagttccacctatcttaaggtgtaggcaatctcagggacccta 51844017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 89852 - 89914
Alignment:
Q  175 gtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    |||||| | |||||||||| ||||||||||||||||||||||||| ||||| || ||||||||    
T  89852 gtgagacaagatgtctcagtgagttccacctatcctaggctgtaggcaatcacagggaaccta 89914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 66 - 1
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  66 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 37498 - 37457
Alignment:
Q  196 agttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  37498 agttccacctatcctaggctgtagacaatctcggggaaccta 37457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 19802257 - 19802322
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  19802257 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 19802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 21959285 - 21959220
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  21959285 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 21959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 42786578 - 42786513
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| ||| |||  ||||||||    
T  42786578 ggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaaccta 42786513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 48477408 - 48477473
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| | |||||||||| ||||||||||||||||||||| ||| ||| |||  ||||||||    
T  48477408 ggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaaccta 48477473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 3737938 - 3737871
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaacctatg 239  Q
    ||||||||| | |||||||||| ||||||||||||| ||||| ||||| | |||||| ||||| ||||    
T  3737938 ggggtgagacatgatgtctcagtgagttccacctattctaggttgtaggcgatctcagggaacatatg 3737871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 4340553 - 4340600
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtag 219  Q
    ||||||||| |  ||||||||| |||||||||||||||||||||||||    
T  4340553 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtag 4340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 20920402 - 20920359
Alignment:
Q  184 gatgtctcagcgagttccacctatcctaggctgtagccaatctc 227  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||    
T  20920402 gatgtctcagtgagttccacctatcctaggttgtaggcaatctc 20920359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 41527887 - 41527952
Alignment:
Q  172 ggggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    ||||||||| |  ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  41527887 ggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 41527952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 19078762 - 19078724
Alignment:
Q  183 ggatgtctcagcgagttccacctatcctaggctgtagcc 221  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  19078762 ggatgtctcagtgagttccacctatcctaggctgtagcc 19078724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 70202 - 70138
Alignment:
Q  173 gggtgagataggatgtctcagcgagttccacctatcctaggctgtagccaatctcaaggaaccta 237  Q
    |||||||| | |||||||||| ||||||||||||||||||| || || |||||||| || |||||    
T  70202 gggtgagacaagatgtctcagtgagttccacctatcctaggatgcaggcaatctcagggtaccta 70138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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