View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_2 (Length: 695)
Name: NF11406_high_2
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_2 |
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| [»] scaffold0153 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 28541772 - 28542173
Alignment:
| Q |
19 |
tatttgggataccaaatatattaaaaataaaatgttaagtctcacttagaataaatttaa--------tataaggatgaattttgtcnnnnnnntataag |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
28541772 |
tatttgggataccaaatatattaaaaataaaatgttaagtctcacttagaataaatttaaaaatttaatataaggatggattttgtcaaaaaaatataag |
28541871 |
T |
|
| Q |
111 |
gatggattaaattcaatataaaaatttaatacagtatcatagtttatcgttttgaaattactcacaacttaagtacatactaaactcaacaatgctgaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28541872 |
gatggattaaattcaatataaaaatttaatacagtatcatagtttatcgttttgaaattactcacaacttaagtacatactaaactcaacaatgctgaag |
28541971 |
T |
|
| Q |
211 |
agtttataaaattcaattatttttataaaccggttttataatgataaattacgttaaatannnnnnnnnacaaataaatcaaatataagacctgataata |
310 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |
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| T |
28541972 |
agtttataaaattcaatta--tttataaaccggttttataatgataaattacgttaaatatttttttttacagataaatcaaatataaaacctgataata |
28542069 |
T |
|
| Q |
311 |
attggagaggtnnnnnnnnngagataaatctccgattttcaatatctcagaactaaagtcaattgcaaggaggtccgataatctacagaactataaatct |
410 |
Q |
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||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28542070 |
attggagaggt--aataaatgatataaatctccgattttgaatatctcagaactaaagtcaactgcaaggaggtccgataatctacagaactataaatct |
28542167 |
T |
|
| Q |
411 |
atagaa |
416 |
Q |
| |
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| |||| |
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|
| T |
28542168 |
acagaa |
28542173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 425 - 685
Target Start/End: Original strand, 28542156 - 28542416
Alignment:
| Q |
425 |
aactataaatctccagaagatttattaaagatttatggcttgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgac |
524 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28542156 |
aactataaatctacagaagatttattaaagatttatggcttgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgac |
28542255 |
T |
|
| Q |
525 |
aaaaggagttaattcgacgtttattcctttgattccaaaggttgacaatccttaaaggttagcagactattgtcccatttctctgattggtagcatgtac |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28542256 |
gaaaggagttaattcgacgtttattcctttgattccaaaggttgacagtccttaaaggttagcagactatcgtcccatttctctgattggtagcatgtac |
28542355 |
T |
|
| Q |
625 |
aaggtgctagccaaggtccttgcgaatcgattacgaacggttcttagttctgttgtctctg |
685 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28542356 |
aaggtgctggccaaggtccttgcgaatcgattacggacggttcttagttctgttgtctctg |
28542416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 571
Target Start/End: Complemental strand, 22871395 - 22871326
Alignment:
| Q |
502 |
tttcatcgtaattggaagttgacaaaaggagttaattcgacgtttattcctttgattccaaaggttgaca |
571 |
Q |
| |
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||||||| ||| ||||||||||||||||||| || ||||||| ||| |||| ||||||||||| |||| |
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| T |
22871395 |
tttcatcaaaatgggaagttgacaaaaggagtaaactcgacgtccattgctttaattccaaaggtagaca |
22871326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 566
Target Start/End: Original strand, 21139724 - 21139825
Alignment:
| Q |
465 |
tgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgacaaaaggagttaattcgacgtttattcctttgattccaaag |
564 |
Q |
| |
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||||||||| || |||||| || | ||| | |||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||||| |
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| T |
21139724 |
tgaattgaaagatgattttttgaggtttttgacggaatttcattgtaatgggaagttgacaaaaggagtaaattcaacgtttattgctttgatttcaaag |
21139823 |
T |
|
| Q |
565 |
gt |
566 |
Q |
| |
|
|| |
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|
| T |
21139824 |
gt |
21139825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 445 - 569
Target Start/End: Complemental strand, 22742333 - 22742209
Alignment:
| Q |
445 |
tttattaaagatttatggcttgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgacaaaaggagttaattcgacgt |
544 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||||||| ||||| | ||| |||||| | ||| |||||||| ||||||| | ||||| | || |
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| T |
22742333 |
tttattaaagatttttggcaggaattgaaggatgattttatgagtttttttgtggagtttcatggaaatgggaagttgtcaaaagggttaaattcaatgt |
22742234 |
T |
|
| Q |
545 |
ttattcctttgattccaaaggttga |
569 |
Q |
| |
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||||| ||||||||||||| ||||| |
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| T |
22742233 |
ttattgctttgattccaaaagttga |
22742209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 28048961 - 28049079
Alignment:
| Q |
448 |
attaaagatttatggcttgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgacaaaaggagttaattcgacgttta |
547 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||| |||| ||| | ||| |||||||| ||| | |||||||| || || ||||||||||||||| |
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| T |
28048961 |
attaaagatttttggcttgagttgaaagatgattttctgcggttttttggggattttcatcggaatggaaagttgactaagggtattaattcgacgttta |
28049060 |
T |
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| Q |
548 |
ttcctttgattccaaaggt |
566 |
Q |
| |
|
|| ||||||| || ||||| |
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| T |
28049061 |
ttgctttgataccgaaggt |
28049079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 566
Target Start/End: Complemental strand, 137951 - 137890
Alignment:
| Q |
505 |
catcgtaattggaagttgacaaaaggagttaattcgacgtttattcctttgattccaaaggt |
566 |
Q |
| |
|
||||||||| ||||||| || |||||| |||| |||||||||||| |||||||||| ||||| |
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|
| T |
137951 |
catcgtaatgggaagttaacgaaaggaattaactcgacgtttattgctttgattcctaaggt |
137890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 566
Target Start/End: Complemental strand, 17189728 - 17189610
Alignment:
| Q |
448 |
attaaagatttatggcttgaattgaaggacgattttatgcgttttataacggaatttcatcgtaattggaagttgacaaaaggagttaattcgacgttta |
547 |
Q |
| |
|
||||||||||| |||| ||| ||||| || ||||||||||||||| | ||| |||||||| ||| ||| ||| |||| || || ||||| || |||| |
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|
| T |
17189728 |
attaaagatttttggcatgagttgaaagatgattttatgcgttttttggtggagtttcatcgaaatgggaggttaccaaagggggtcaattccactttta |
17189629 |
T |
|
| Q |
548 |
ttcctttgattccaaaggt |
566 |
Q |
| |
|
|| | |||||||||||||| |
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|
| T |
17189628 |
ttgcgttgattccaaaggt |
17189610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 566
Target Start/End: Original strand, 41805044 - 41805112
Alignment:
| Q |
498 |
ggaatttcatcgtaattggaagttgacaaaaggagttaattcgacgtttattcctttgattccaaaggt |
566 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| | ||||| || |||||| || ||||||||||||| |
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|
| T |
41805044 |
ggaatttcatcgtaatgggaagctaacaaaaggattgaattctacttttattgctctgattccaaaggt |
41805112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 653
Target Start/End: Original strand, 22676 - 22794
Alignment:
| Q |
535 |
aattcgacgtttattcctttgattccaaaggttgacaatccttaaaggttagcagactattgtcccatttctctgattggtagcatgtacaaggtgctag |
634 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| | | |||| |||||||||| || | | ||||||||||||| | ||| ||||||| || || ||| |
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|
| T |
22676 |
aattcgacgttcattgctttgattccgaaggtggttagtcctcaaaggttagctgattttcgtcccatttctcttgtgggttgcatgtataaattgttag |
22775 |
T |
|
| Q |
635 |
ccaaggtccttgcgaatcg |
653 |
Q |
| |
|
| ||||||||||| ||||| |
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|
| T |
22776 |
ctaaggtccttgctaatcg |
22794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 40175 - 40130
Alignment:
| Q |
526 |
aaaggagttaattcgacgtttattcctttgattccaaaggttgaca |
571 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||| |||| |
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|
| T |
40175 |
aaaggagtaaattcgacatttattcctttgattccaatggtggaca |
40130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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