View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_20 (Length: 242)
Name: NF11406_high_20
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19166186 - 19166409
Alignment:
| Q |
1 |
atctcagacaacaattcgaagtgtgcggaatattaacggatgtgttcattgcaagaaaaaggaatgcacgaggacaggtttatggttttgctcgctttac |
100 |
Q |
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| T |
19166186 |
atctcagacaacaattcgaagtgtgcggaatattaacggatgtgttcattgcaagaaaaaggaatgcacgaggacaggtttatggttttgctcgctttac |
19166285 |
T |
|
| Q |
101 |
gaacatcaaaaatccatataagttatgtaatgttctcaacaatgtctggtttggttgtcttaagggtttctaagtcagtagggtgtaaagatgttggcgt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166286 |
gaacgtcaaaaatccatataagttatgtaatgttctcaacaatgtctggtttggttatcttaagggtttctaagtcagtagggtgtaaagatgttggcgt |
19166385 |
T |
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| Q |
201 |
ggtaaggaggaaggaggtggagag |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
19166386 |
agtaaggaggaaggaggtggagag |
19166409 |
T |
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