View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_high_21 (Length: 240)

Name: NF11406_high_21
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_high_21
NF11406_high_21
[»] chr8 (10 HSPs)
chr8 (45-224)||(25938934-25939113)
chr8 (50-216)||(44587554-44587720)
chr8 (98-210)||(30273684-30273796)
chr8 (1-44)||(9984903-9984946)
chr8 (143-224)||(7176113-7176194)
chr8 (149-198)||(41344221-41344270)
chr8 (50-216)||(40796449-40796615)
chr8 (149-222)||(45381899-45381972)
chr8 (45-177)||(896802-896934)
chr8 (148-196)||(22255230-22255278)
[»] chr1 (7 HSPs)
chr1 (45-223)||(12928544-12928722)
chr1 (81-225)||(3158405-3158549)
chr1 (68-223)||(30091959-30092115)
chr1 (146-224)||(19477368-19477446)
chr1 (146-215)||(3215058-3215127)
chr1 (50-210)||(46149310-46149473)
chr1 (149-198)||(45638060-45638109)
[»] chr6 (3 HSPs)
chr6 (45-212)||(1512187-1512354)
chr6 (143-195)||(5477355-5477407)
chr6 (145-213)||(12200396-12200464)
[»] scaffold0169 (1 HSPs)
scaffold0169 (45-211)||(22742-22908)
[»] chr3 (8 HSPs)
chr3 (50-216)||(22522575-22522741)
chr3 (50-216)||(54332513-54332680)
chr3 (45-215)||(1538970-1539140)
chr3 (56-215)||(6032806-6032965)
chr3 (45-216)||(19792181-19792354)
chr3 (143-224)||(25422074-25422155)
chr3 (148-196)||(13760202-13760250)
chr3 (65-101)||(42443733-42443769)
[»] chr2 (8 HSPs)
chr2 (45-215)||(40492340-40492510)
chr2 (143-216)||(32835934-32836007)
chr2 (94-195)||(13221781-13221882)
chr2 (146-215)||(14150322-14150391)
chr2 (145-189)||(3981805-3981849)
chr2 (148-204)||(5595135-5595191)
chr2 (143-215)||(11524085-11524157)
chr2 (148-196)||(18684619-18684667)
[»] chr7 (5 HSPs)
chr7 (83-225)||(28841516-28841658)
chr7 (146-215)||(27804700-27804769)
chr7 (143-216)||(2274832-2274905)
chr7 (143-195)||(20463594-20463646)
chr7 (145-197)||(23834839-23834891)
[»] chr4 (3 HSPs)
chr4 (143-224)||(11116164-11116245)
chr4 (158-214)||(50858462-50858518)
chr4 (148-224)||(26622662-26622738)
[»] chr5 (4 HSPs)
chr5 (93-213)||(14489326-14489446)
chr5 (95-201)||(38356615-38356721)
chr5 (149-198)||(8274683-8274732)
chr5 (146-213)||(27039786-27039851)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 25938934 - 25939113
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactt 144  Q
    |||| ||||||||||| || ||||| |||| ||| |  ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  25938934 atgccaagaaagttgtagattattttaatagaggaaacaatgatataaccgagtttggagcaatagtggaggagtgtagaagaagttgtaatctttactt 25939033  T
Q  145 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  25939034 tgaaaactctaaggtagagtttagtcggagacaagcgaatgaggtcgctcacactttagctcgagaggccactttcttag 25939113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 44587554 - 44587720
Alignment:
Q  50 aagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgta-gaagaagttgtaatcttcactttgaa 148  Q
    |||||||||||||| ||||||||||| || || ||||||||| | |||||||||||  || |||| ||||||| |||||| ||  | |  | | ||||||    
T  44587554 aagaaagttgtggattatttcaataagggcaggaatgatatatccgagtttggagccgtaatggacgaatgtaggaagaa-ttccattgattattttgaa 44587652  T
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    ||||||||||| ||||||| |||||||||| |||||| ||| |||||  |||| |||| ||| |||||    
T  44587653 aactctaaggtggagtttagtcggagacaatcgaatgtggttgctcatgctcttgctcaagaagccac 44587720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 30273796 - 30273684
Alignment:
Q  98 tttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcaca 197  Q
    |||||||||||| |||| ||||||| |||| || |||||  | | ||  ||||| ||||||| ||||||| |||||||||||||||||| |||||||| |    
T  30273796 tttggagcaatattggatgaatgtaaaagatgtcgtaatggttatttcaaaaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcata 30273697  T
Q  198 ctctagctcgaga 210  Q
    |||| ||| ||||    
T  30273696 ctcttgctagaga 30273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9984903 - 9984946
Alignment:
Q  1 taccattttatgcgaggtcaaatttcaaaataaatctcactcaa 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  9984903 taccattttatgcgaggtcaaattttaaaataaatctcactcaa 9984946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 7176113 - 7176194
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    |||||||| |||||||| ||||||  | |||||||||||||||| |||||||| | | ||||||||||||| || |||||||    
T  7176113 tttgaaaattctaaggttgagttttgtaggagacaagcgaatgaagtcgctcataatttagctcgagaggctacattcttag 7176194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 41344221 - 41344270
Alignment:
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 198  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  41344221 aactctaaggtagagtttaaccggagacaagcgaatgaggtagctcacac 41344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 40796449 - 40796615
Alignment:
Q  50 aagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaa 149  Q
    |||||||||||||| |||||||||| ||| || ||||| ||  | |||||||||| ||| || || |||||||  ||||| |||| | |  | |||||||    
T  40796449 aagaaagttgtggattatttcaatagaggaagaaatgacatttccgagtttggagtaattgttgatgaatgtaagagaagatgtagtgtgtattttgaaa 40796548  T
Q  150 actctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    ||| ||||||  |||||| ||||| |||||| |||| ||| ||||| || || ||| |||| |||||    
T  40796549 actttaaggtgaagtttaatcggaaacaagcaaatgtggttgctcatacacttgctagagatgccac 40796615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 45381972 - 45381899
Alignment:
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttctt 222  Q
    |||||| |||| ||||||| |||||| |||||||||||||| |||||||| || || | ||||||||| |||||    
T  45381972 aactcttaggttgagtttagtcggagccaagcgaatgaggttgctcacacccttgcacaagaggccactttctt 45381899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 896934 - 896802
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactt 144  Q
    |||| |||||||||||||| ||||| |||  ||| || ||||| ||  | ||||||||||| || || || |||||||  ||||| |||| | |  | ||    
T  896934 atgccaagaaagttgtggattattttaattgaggaagaaatgacatttccgagtttggagcgattgttgatgaatgtaagagaagatgtagtgtgtattt 896835  T
Q  145 tgaaaactctaaggtagagtttactcggagaca 177  Q
    |||||||||||||||||||||||  ||||||||    
T  896834 tgaaaactctaaggtagagtttaaacggagaca 896802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 22255278 - 22255230
Alignment:
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcac 196  Q
    |||||||||||| ||||||| |||| ||||||| |||||||| ||||||    
T  22255278 aaactctaaggttgagtttaatcggcgacaagcaaatgaggtagctcac 22255230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 12928544 - 12928722
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactt 144  Q
    |||| |||||||||||||| ||||| |||| ||| |  ||||||||||| || ||||||||||||||| | || ||||||||||||||||||||| ||||    
T  12928544 atgccaagaaagttgtggattattttaatagaggaaacaatgatataaccgaatttggagcaatagtgaaggagtgtagaagaagttgtaatctttactt 12928643  T
Q  145 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttctta 223  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||| || |||||||| |||| ||||||    
T  12928644 tgaaaactctaaggtagagtttagtcggaaacaagcgaataaggttgctcacactttatctcgagagaccactttctta 12928722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 3158549 - 3158405
Alignment:
Q  81 gtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagc 180  Q
    ||||||||||| |||||||||||||||||||||| || |||   ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  3158549 gtaatgatatatctgagtttggagcaatagtggaggagtgtcagagaagttgtaatctttattttgaaaactctaaggtagagtttagtcggagacaagc 3158450  T
Q  181 gaatgaggtcgctcacactctagctcgagaggccacgttcttagt 225  Q
    || ||| ||| |||| ||||| |||||||||||||| ||||||||    
T  3158449 gagtgaagtcactcatactcttgctcgagaggccactttcttagt 3158405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 30092115 - 30091959
Alignment:
Q  68 ttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaa-tgtagaagaagttgtaatcttcactttgaaaactctaaggtagagttt 166  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||| || | ||| | ||||||||| ||||  | ||||||||| ||||||||||||||    
T  30092115 ttcaatagaggtagtaatgatattactgagtttggagcaatagtgggaggagtgtcggagaagttgtgatctctattttgaaaacactaaggtagagttt 30092016  T
Q  167 actcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttctta 223  Q
    | |||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||    
T  30092015 agtcggagacaatcgaaggaggtcgctcacactctagctcgagaggacactttctta 30091959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 19477368 - 19477446
Alignment:
Q  146 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||    
T  19477368 gaaaactccatggtagagtttagtcggagacaagcgaatgaggtcgctcacactcttgcacgagaggccactttcttag 19477446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 3215058 - 3215127
Alignment:
Q  146 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    |||||||||||||| ||||| | | ||||||||||||||||||||||||| ||||| |||  ||||||||    
T  3215058 gaaaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcatactcttgctacagaggcca 3215127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 46149473 - 46149310
Alignment:
Q  50 aagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaat--ct-tcactttg 146  Q
    ||||| ||||| || |||||||||||||| || ||||||||  || | | |||||||||  | ||  ||||||| ||||||||||||  || ||| ||||    
T  46149473 aagaatgttgtagattatttcaataaaggtagcaatgatatctctaaatatggagcaattatagataaatgtaggagaagttgtaataactctcattttg 46149374  T
Q  147 aaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgaga 210  Q
    ||||||||||||| ||||||| | | | ||||| ||||| ||||| ||| ||||| ||||||||    
T  46149373 aaaactctaaggtggagtttagttgaaaacaagggaatgtggtcgttcagactcttgctcgaga 46149310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 45638060 - 45638109
Alignment:
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 198  Q
    ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  45638060 aactcaaaggttgagtttaatcggagacaagcgaatgaggtagctcacac 45638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 1512187 - 1512354
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatcttcact 143  Q
    |||| |||||||||||||| ||||||||||| ||  | ||||||||| | ||||||||||| ||| |||| |||||||| ||||| ||| |||  |   |    
T  1512187 atgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagctataatggatgaatgtaggaagaa-ttgcaatgattgtt 1512285  T
Q  144 ttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagagg 212  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||    
T  1512286 ttgaaaattctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagagg 1512354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 5477407 - 5477355
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctca 195  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  5477407 tttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactca 5477355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 12200464 - 12200396
Alignment:
Q  145 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggc 213  Q
    |||||||| |||| | ||||||| | ||||||||||||||||||||||||| ||||| ||| |||||||    
T  12200464 tgaaaactttaagatggagtttagttggagacaagcgaatgaggtcgctcatactcttgctagagaggc 12200396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 22908 - 22742
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatcttcact 143  Q
    |||| |||||||||||||| ||||||||||| ||  | ||||||||| | ||||||||||| ||| |||| |||||||| ||||| ||| |||  |   |    
T  22908 atgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagctataatggatgaatgtaggaagaa-ttgcaatgattgtt 22810  T
Q  144 ttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagag 211  Q
    ||||||||||||||||  |||||| ||||||||||||||||| ||||||||| ||||| |||||||||    
T  22809 ttgaaaactctaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagag 22742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 22522741 - 22522575
Alignment:
Q  50 aagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatcttcactttgaa 148  Q
    |||||||||||| | ||||||||||| || || ||||||||| | || |||||||| ||| |||| |||||||| ||||| ||| |||  |   ||||||    
T  22522741 aagaaagttgtgtattatttcaataagggaaggaatgatatatccgaatttggagccataatggatgaatgtaggaagaa-ttgcaatgatttttttgaa 22522643  T
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||||    
T  22522642 aactctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaagccac 22522575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 54332680 - 54332513
Alignment:
Q  50 aagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatc-ttcactttga 147  Q
    |||||||||||||| ||||||||||| || | |||||||||| | ||||||||||| ||| ||||  ||||||| ||||| ||| |||  ||   ||| |    
T  54332680 aagaaagttgtggattatttcaataagggcaataatgatatatcagagtttggagccataatggataaatgtaggaagaa-ttgcaatgattttttttca 54332582  T
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    |||||||||||| ||||||| |||||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  54332581 aaactctaaggtggagtttagtcggagacaaacgaatgtggtcgctcatactcttgctcgagaggccac 54332513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 1539140 - 1538970
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatcttcact 143  Q
    |||| |||||||||||||| ||||||||||| ||  | ||||||||| | ||||||||||  ||| |||| |||||||| ||||| ||| |||  |   |    
T  1539140 atgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagatataatggatgaatgtaggaagaa-ttgcaatgattgtt 1539042  T
Q  144 ttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    |||||||||||||||| ||||||| ||||||||||||||||  ||||||||| ||||| |||| ||||||||    
T  1539041 ttgaaaactctaaggtggagtttagtcggagacaagcgaatatggtcgctcatactcttgctccagaggcca 1538970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 6032965 - 6032806
Alignment:
Q  56 gttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatcttcactttgaaaactct 154  Q
    |||||||| ||||||||| | || || ||||||||| | ||||||||||| ||| |||| |||||||| ||||| ||| |||  |    || ||||||||    
T  6032965 gttgtggaatatttcaatgagggaaggaatgatatatccgagtttggagccataatggatgaatgtaggaagaa-ttgcaatgattttcttaaaaactct 6032867  T
Q  155 aaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    ||||| | ||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  6032866 aaggtggtgtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggcca 6032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 19792181 - 19792354
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttc--ac 142  Q
    |||| |||||||||||||| ||||| |||| ||| || ||||| ||  | |||||||||||||| || || |||||||  ||||| |||| | |    |     
T  19792181 atgccaagaaagttgtggattattttaatagaggaagaaatgacatttccgagtttggagcaattgttgatgaatgtaagagaagatgtagtgtgtgtat 19792280  T
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| ||| ||||| || || ||| ||||||||||    
T  19792281 tttgaaaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggccac 19792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 25422155 - 25422074
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    |||| |||||||||||||||||||  |  ||||||||||||||| |||||||| | | |||| |||||||| || |||||||    
T  25422155 tttggaaactctaaggtagagttttgtaagagacaagcgaatgaagtcgctcataatttagcccgagaggctacattcttag 25422074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 13760250 - 13760202
Alignment:
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcac 196  Q
    |||||||||||| |||||||||| | ||||||| |||||||| ||||||    
T  13760250 aaactctaaggttgagtttactctgcgacaagcaaatgaggtagctcac 13760202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 42443769 - 42443733
Alignment:
Q  65 tatttcaataaagggagtaatgatataactgagtttg 101  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  42443769 tatttcaataaagtgagtaatgatataattgagtttg 42443733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 40492340 - 40492510
Alignment:
Q  45 atgctaagaaagttgtggactatttcaataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactt 144  Q
    |||| ||||||||||| || ||||| || |||||   |||||| ||  ||||||||||||||||||| || |||||| | |||| ||||   ||| | ||    
T  40492340 atgcaaagaaagttgtagattattttaacaaaggtcataatgacatttctgagtttggagcaatagttgaggaatgtcggagaaattgtctactt-attt 40492438  T
Q  145 tgaaaactctaa-ggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||    
T  40492439 tgtaaactctaaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacatttgctcgagaggcca 40492510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 32836007 - 32835934
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||| ||||| | ||| || |||||||||||    
T  32836007 tttgaaaactctaaggttgagtttagtcggagacaaacgaatgaggtagctcataatcttgcacgagaggccac 32835934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 13221781 - 13221882
Alignment:
Q  94 tgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgct 193  Q
    ||||||||||||||| ||||| |||||| | |||| ||||  |  | | ||||||||||||||||||||||||| || ||||||||| | |||||| |||    
T  13221781 tgagtttggagcaatcgtggaggaatgtcggagaaattgtgttacttattttgaaaactctaaggtagagtttagtcagagacaagcaactgaggttgct 13221880  T
Q  194 ca 195  Q
    ||    
T  13221881 ca 13221882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 14150391 - 14150322
Alignment:
Q  146 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    |||||||||||||  ||||| | ||||||||||||||||||||||||||| ||||| |||  ||||||||    
T  14150391 gaaaactctaaggatgagttcagtcggagacaagcgaatgaggtcgctcatactcttgctaaagaggcca 14150322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 3981849 - 3981805
Alignment:
Q  145 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggt 189  Q
    |||||||||||  || ||||||| |||||||||||||||||||||    
T  3981849 tgaaaactctagtgtggagtttattcggagacaagcgaatgaggt 3981805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 5595191 - 5595135
Alignment:
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagc 204  Q
    |||||||||||| ||||||| | || ||||||| |||||||| ||||||||| ||||    
T  5595191 aaactctaaggtcgagtttagtaggcgacaagcaaatgaggtagctcacactttagc 5595135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 11524157 - 11524085
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    ||||||||||||||| | ||||||| | ||||||||||||||   |||||||| ||| | ||| |||||||||    
T  11524157 tttgaaaactctaagattgagtttaataggagacaagcgaatatagtcgctcatactattgctagagaggcca 11524085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 18684667 - 18684619
Alignment:
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcac 196  Q
    ||||||||| ||  |||||| ||||||||||||||||||||| ||||||    
T  18684667 aaactctaaagtcaagtttaatcggagacaagcgaatgaggtagctcac 18684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 28841658 - 28841516
Alignment:
Q  83 aatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcga 182  Q
    ||||||||| |||| ||||||||||||||||| || |||   ||||||||| | ||| | ||| ||||||||||||||||||||| |||||| ||||| |    
T  28841658 aatgatatacctgaatttggagcaatagtggaggagtgtcatagaagttgtgaactttaatttaaaaactctaaggtagagtttagtcggagtcaagcaa 28841559  T
Q  183 atgaggtcgctcacactctagctcgagaggccacgttcttagt 225  Q
    ||||||| ||| || |||||| |||||||| |||  |||||||    
T  28841558 atgaggttgcttactctctagttcgagaggtcactgtcttagt 28841516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 27804769 - 27804700
Alignment:
Q  146 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcca 215  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||||||| ||||| ||| |||||||||    
T  27804769 gaaaactctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgctagagaggcca 27804700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 2274905 - 2274832
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccac 216  Q
    |||||||||| ||||||  |||||| ||||||||||||||||| ||||||||| | ||| ||||||||| ||||    
T  2274905 tttgaaaactttaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatattcttgctcgagagcccac 2274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 20463646 - 20463594
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctca 195  Q
    ||||||||||||||||| ||||||| | |||||||||||| |  |||||||||    
T  20463646 tttgaaaactctaaggttgagtttaataggagacaagcgagtatggtcgctca 20463594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 23834839 - 23834891
Alignment:
Q  145 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcaca 197  Q
    ||||||||||||||||||||||   ||||||||||| |||||||  |||||||    
T  23834839 tgaaaactctaaggtagagtttgtacggagacaagcaaatgaggcagctcaca 23834891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 11116164 - 11116245
Alignment:
Q  143 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || | ||||||||||| |||||    
T  11116164 tttgcaaactctaaggtagagtttagtcggagacaagcgaacgaggtcgctcacactcttgcacaagaggccacgtccttag 11116245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 50858462 - 50858518
Alignment:
Q  158 gtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggcc 214  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  50858462 gtagagtttagtcggagacaagcgaacgaggtcgctcatactcttgctcgagaggcc 50858518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 26622662 - 26622738
Alignment:
Q  148 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggccacgttcttag 224  Q
    |||||||||||||||||||  | |||||||||||||||| |||||| | | | ||||||||||||| || |||||||    
T  26622662 aaactctaaggtagagttttgtaggagacaagcgaatgaagtcgcttataatttagctcgagaggctacattcttag 26622738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 14489446 - 14489326
Alignment:
Q  93 ctgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgc 192  Q
    |||| |||||||||||| |||| ||||| | |||| |  | ||| || | || ||||||||||||||  |||||| ||||||||||||||||||||||||    
T  14489446 ctgaatttggagcaatattggaggaatgcaaaagatgccgcaatgtttatttcgaaaactctaaggtgaagtttagtcggagacaagcgaatgaggtcgc 14489347  T
Q  193 tcacactctagctcgagaggc 213  Q
    ||| ||||| ||| |||||||    
T  14489346 tcatactcttgctagagaggc 14489326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 38356615 - 38356721
Alignment:
Q  95 gagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctc 194  Q
    |||||||||||||||||||| ||||||| |||| |||||||| || | || ||||| |||||||| || |||| ||||||||||| || ||| ||| |||    
T  38356615 gagtttggagcaatagtggacgaatgtaaaagatgttgtaatgtttatttcgaaaattctaaggtggaatttagtcggagacaagtgagtgaagtccctc 38356714  T
Q  195 acactct 201  Q
    | |||||    
T  38356715 atactct 38356721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 8274683 - 8274732
Alignment:
Q  149 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 198  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  8274683 aactctaaggtagagtttaaccggagacaagcgaatgaggtagctcacac 8274732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 27039851 - 27039786
Alignment:
Q  146 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctagctcgagaggc 213  Q
    |||||||||||||| |||||||   |||||| |||||||||||||||||| ||||| ||| |||||||    
T  27039851 gaaaactctaaggtggagtttaa--ggagacgagcgaatgaggtcgctcatactcttgctagagaggc 27039786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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