View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_24 (Length: 214)
Name: NF11406_high_24
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 16974895 - 16974712
Alignment:
| Q |
17 |
aggaagttgacgacagtttctgcacttggtagaaatatttatcatccagtttgaaatatttacttctccataaccgctcatctcaaaaccctcgagatct |
116 |
Q |
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| T |
16974895 |
aggaagttgacgacagtttctgcacttggtagaaatatttatcatccagtttgaaatatttacttctccataactgctcatcttaaaaccctcgagacct |
16974796 |
T |
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| Q |
117 |
ctgtgaggctcgagaatttgatgtggagcggaatcagcatcgcaaccacaagacaagttgtaggatgcattctgaaggcctttg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
16974795 |
ctctgaggctcgagaatttgatgtggagcggaatcagcatcgcaaccacaagacaagttgtaggaggtattctgaaggcctttg |
16974712 |
T |
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