View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_26 (Length: 205)
Name: NF11406_high_26
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 45149377 - 45149186
Alignment:
| Q |
1 |
atcataggcttcacctatgcttccacatttacaatacatttcaaggagtgcatttccccccaagcacccattgtcataccctgtcttcaccgcctgtcca |
100 |
Q |
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| T |
45149377 |
atcataggcttcacctatgcttccacatttacaatacatttcaaggagtgcatttcccaccaagcagccattgtcataccctgtcttcaccgcctgtcca |
45149278 |
T |
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| Q |
101 |
tgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttttgccgtccct |
192 |
Q |
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| T |
45149277 |
tgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttttgccgtccct |
45149186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 45165724 - 45165557
Alignment:
| Q |
15 |
ctatgcttccacatttacaatacatttcaaggagtgcatttccccccaagcacccattgtcataccctgtcttcaccgcctgtccatgaacttgtttccc |
114 |
Q |
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| T |
45165724 |
ctatgctgccacatttaaaatacattgcaagaagcgcattccccacgaaacacccagtcccatatcccatcttcaccgcctgcccatgaatttgtttccc |
45165625 |
T |
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| Q |
115 |
taacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
182 |
Q |
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| T |
45165624 |
caactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaacttt |
45165557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 24136604 - 24136716
Alignment:
| Q |
79 |
ccctgtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaa |
178 |
Q |
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| T |
24136604 |
ccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccagcacatgtgcttaaggca-aacataaggtagatctatttaaa |
24136702 |
T |
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| Q |
179 |
cttttgccgtccct |
192 |
Q |
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| T |
24136703 |
tttttgccgtccct |
24136716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 24134290 - 24134403
Alignment:
| Q |
79 |
ccctgtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaa |
178 |
Q |
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||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||| |||| |
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| T |
24134290 |
ccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccataccagcacatgtgctcaaatgacaacataatgtatatctacataaa |
24134389 |
T |
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| Q |
179 |
cttttgccgtccct |
192 |
Q |
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|||| ||| ||||| |
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| T |
24134390 |
ctttcgccatccct |
24134403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 24134083 - 24134169
Alignment:
| Q |
106 |
ttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttttgccgtccct |
192 |
Q |
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||||||||||| || ||||||||| ||| | |||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||| |
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| T |
24134083 |
ttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtccct |
24134169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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