View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_3 (Length: 650)
Name: NF11406_high_3
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 118 - 634
Target Start/End: Original strand, 4246698 - 4247185
Alignment:
| Q |
118 |
ggcctgagtttcatcaaattggtgatcatataaatattttatgttaatatggataaaattaaatagcatgtaatttctgttcacttggtttggtaagact |
217 |
Q |
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| T |
4246698 |
ggcctgagtttcatcaaattggtgatcatataaatattt-atgttaatatggataaaatta----------------------cttggtttggtaagact |
4246774 |
T |
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| Q |
218 |
catcgaatgtatttatgattannnnnnncacccacactagctaagcaaatgataaaatcaatttgaaagatatgtattaaaaaggataggtaatgtctat |
317 |
Q |
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| T |
4246775 |
tatcgaatgtatttatgattatttttttcacccacactagctaagcaaatgataagatcaatttgaaagatatgtattaaaaaggataggtaatgtctat |
4246874 |
T |
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| Q |
318 |
taaagtctggtcacatgtctaagtgaaataacgaaaccagagtaattttttacaaaatagtgtggttttgcttcagcattttgaactatccttttgagga |
417 |
Q |
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| T |
4246875 |
taaagtctggtcacatgtctaagtgaaataatgaaaccagagtaattttttacaagatagtgtggttttgcttcagcattttgaactatccttttgagga |
4246974 |
T |
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| Q |
418 |
gaagtgttttggattggagtagttgcttgaatcttgagtttaactggactcataccaaacaaatcctagcaaagtatttctttgagtaaagtggtatgtc |
517 |
Q |
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| T |
4246975 |
gaagtgttttggattggagtagttgcttgaatcttgagtttaactggactcataccaaacaaatcctagcaaagtatttctttgagtaaagtggta---- |
4247070 |
T |
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| Q |
518 |
attgtcatgggtgagaaagaaatgtattttgtttgttttttgtgtgaaaatgttcaatattgctcttggatgatattcaagttgatatttggatatctga |
617 |
Q |
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| T |
4247071 |
--tgtcatgggtgagaaagaaatgtattttgtttgttttttgtgtgaaaatgttcaatattgctcttggatgatattcaagttgatatatggatatctga |
4247168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 4246254 - 4246311
Alignment:
| Q |
51 |
ttatagtcatatcataggtaacatgcaaaaaagcactttgacattttatttgtttagt |
108 |
Q |
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| T |
4246254 |
ttatagtcatatcataggtaacatgcaaaaaagcactttgacattttatttgtttagt |
4246311 |
T |
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