View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11406_high_4 (Length: 432)
Name: NF11406_high_4
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 2366857 - 2366448
Alignment:
| Q |
18 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2366857 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
2366758 |
T |
|
| Q |
118 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2366757 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
2366658 |
T |
|
| Q |
218 |
atggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2366657 |
atggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctt |
2366558 |
T |
|
| Q |
318 |
tgcccttcttcctcgttgatcacattcgtag---gaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2366557 |
tgcccttcttcctcgttgatcacattcgtaggatgaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccatt |
2366458 |
T |
|
| Q |
415 |
gcttcatctc |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
2366457 |
gcttcatctc |
2366448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 2362247 - 2361850
Alignment:
| Q |
18 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
117 |
Q |
| |
|
|||| ||| ||||||||| | |||||||||||| | |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2362247 |
aatattgtcgctttgattgtagtatcagaatcacacccttcaattggtgtttcatcaagcaatgaaagcaaggcatccatgaagtcttgatgatcatgat |
2362148 |
T |
|
| Q |
118 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
217 |
Q |
| |
|
||| || ||| || ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2362147 |
caatcttctt---actcaaactccttttatggcggcgctcttccaacaactcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
2362051 |
T |
|
| Q |
218 |
atggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||| |
|
|
| T |
2362050 |
atggccaccaaaatcaaaccattttagaaaaggaatggcatctcctattgtgaacacccctaacaatcgcatcaactcttgtaaagcttttatacatctt |
2361951 |
T |
|
| Q |
318 |
tgcccttcttcctcgttgatcacattcgtaggaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgct |
417 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
2361950 |
tgcgcttcttcctcgttcgccacattcgtagcaccaaaatatcgtttcccaaccagcactggaagaacaatgttgaaacttaattgagtaaaccattgct |
2361851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 2349913 - 2349606
Alignment:
| Q |
18 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
117 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||| ||||| || ||| ||||||||| |||||||| | ||||||||||| |||||||| | ||| |
|
|
| T |
2349913 |
aatattgttgctttgattatggtatcacaatcaaacccttccatggtttttccatcaagcaatgaaattaacacatccatgatgtcttgatctt---gat |
2349817 |
T |
|
| Q |
118 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
217 |
Q |
| |
|
|| | |||| || |||| ||||||||||||| ||||||| |||| | ||||||||||| | ||||| ||| |||||||| | | ||||||||||| |
|
|
| T |
2349816 |
catcagccttttcagtcaaagtccttttatggcgatgctccttcaaccactcacctaaaatttcgtccatttccgtagaagtttcatccatggccttcat |
2349717 |
T |
|
| Q |
218 |
atggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctt |
317 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||| ||||||| | |||| ||||| |||||| |||| | || || |||||||| |||| |||| |
|
|
| T |
2349716 |
atgaccaccaaaatcaaaccattttaaacaaggaataacatctcccaccgtgattaccccgaacaaacgcataatctccttcaaagctttcacacttctt |
2349617 |
T |
|
| Q |
318 |
tgcccttcttc |
328 |
Q |
| |
|
|| ||||||| |
|
|
| T |
2349616 |
tgagcttcttc |
2349606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 2338873 - 2338656
Alignment:
| Q |
18 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
117 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| | ||||||||||| |||||||| | ||| |
|
|
| T |
2338873 |
aatagtgtggctttgattatggtatcaccgtcaaacccttcaatggttgttccatcaagcaatgaaagtaacacatccatgatgtcttgattaccttgat |
2338774 |
T |
|
| Q |
118 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
217 |
Q |
| |
|
|| | || || ||||| ||||||||||||| |||||| |||| | ||| | |||||||||||||| || || |||||| ||||||||| |||||| |
|
|
| T |
2338773 |
catcaaggttttcaaccaaagtccttttatggcgacgctccttcaaccactcatcaaaaatcttgtccaactccttggaagtttctttcatggtcttcac |
2338674 |
T |
|
| Q |
218 |
atggccaccaaaatcaaa |
235 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
2338673 |
ataaccaccaaaatcaaa |
2338656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 2306549 - 2306465
Alignment:
| Q |
24 |
gtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgat |
108 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
2306549 |
gtggctttgattatggtatcaccatcaaacccttcgatggttgttccatcaagcaatgaaagcaacacatccatgatatcttgat |
2306465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 2356406 - 2356317
Alignment:
| Q |
173 |
taaaatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatcaaaccattttagtaaaggaatggcatctcc |
262 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| || ||||||||||||||||||||||||| || || ||||||| |||||||| |
|
|
| T |
2356406 |
taaaatcatgtccaattccttagaagtttttttcatagctttcacatggccaccaaaatcaaaccgttctaaacaaggaatagcatctcc |
2356317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 2356547 - 2356462
Alignment:
| Q |
24 |
gtggctttgattatggtatcagaatcaaatcc-ttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgat |
108 |
Q |
| |
|
|||||||||||| ||||||| | |||||| || ||||||||||||||||||||||| |||||||| | |||||||| ||||||| |
|
|
| T |
2356547 |
gtggctttgattgtggtatcggcatcaaaacccttcaattgttgttccatcaaacagtgaaagcaatgcgtccatgaaatcttgat |
2356462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 2306394 - 2306337
Alignment:
| Q |
176 |
aatcttgtccaattctttagaagttgctttcatggccttcacatggccaccaaaatca |
233 |
Q |
| |
|
|||||| ||||| || || |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2306394 |
aatcttatccaactccttggaagtttctttcatggccttcacataaccaccaaaatca |
2306337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 4304013 - 4303615
Alignment:
| Q |
23 |
tgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgatcaacc |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4304013 |
tgtggctttgattacggtatcagaatcaaatccttcaattgttgttccatcaagcaatgaaagcatcacatccatgaagtcttgatgatcaccatcaacc |
4303914 |
T |
|
| Q |
123 |
tccttc---gcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcacat |
219 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||| | || | ||||||||||||||||| |
|
|
| T |
4303913 |
tccttctgatcactcaaactccttttacgttggtgctcctccaacaaatcacctataatcttgtccatctctttggtagcttttttcatggccttcacat |
4303814 |
T |
|
| Q |
220 |
ggccaccaaaatcaaaccattttagtaaaggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacacatctttg |
319 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |||||||| | |||||||||||| | |||| ||| || || ||||| ||||||||||||| ||| |
|
|
| T |
4303813 |
ggcccccaaaatcaaaccattttaaaaaaggaagagcatctcccactgtgaacacccccatcaaacgcagcatctcttttatagcttttacacatatttc |
4303714 |
T |
|
| Q |
320 |
cccttcttcctcgttgatcacattcgtaggaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccattgctt |
418 |
Q |
| |
|
||||||||| || ||| ||||| |||| ||| |||||| | || ||||||| || ||||||||| | | | | |||||||||| ||||||||||| |
|
|
| T |
4303713 |
tacttcttccttgtcgataacatttgtagaaccgaaatatcgctttccaaccaacaatggaagaaccaagtctatattcaattgagtaaaccattgctt |
4303615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 41342160 - 41341755
Alignment:
| Q |
18 |
aatactgtggctttgattatggta---tcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattcc |
114 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||| | | |
|
|
| T |
41342160 |
aatattgtggctttgatgatggtagtatcagaatcaaatctttcaattgttgttccattaagcaatgaaagcatcacatccatgaagtctcgatgctcac |
41342061 |
T |
|
| Q |
115 |
gatcaacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggcctt |
214 |
Q |
| |
|
|||||||||| ||| ||| |||| |||| |||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
41342060 |
gatcaacctcattctcactcaaagtcctattat-gcgatgctccttcaacatatcacctaaaatcttgtccaattctttagaaaaaaatttcattgcctt |
41341962 |
T |
|
| Q |
215 |
cacatggccaccaaaatcaaaccattttagtaaa-ggaatggcatctcctattgtgaacacccctaacaaatgcatcaacttttttaaagcttttacaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| ||| | || | |||||||||||||||||| | | || || || |||||||| | ||| |
|
|
| T |
41341961 |
cacatggccaccaaaatcaaaccattttagaaaagggaagagcaccacccaccgtgaacacccctaacaaacgtaacatctcttccaaagctttcataca |
41341862 |
T |
|
| Q |
314 |
tctttgcccttcttcctcgttgatcacattcgtaggaccaaaatattgtttcccaaccagcattggaagaacaatattgaaactcaattgagttaaccat |
413 |
Q |
| |
|
| |||| ||||||||| || | ||||||||||| ||||||||| | |||||||||| ||||||||||||||| || |||||||||||| || ||| |
|
|
| T |
41341861 |
tttttgttcttcttccttgtcaaccacattcgtagctccaaaatatcgcttcccaaccaacattggaagaacaatgtttttactcaattgagtaaaacat |
41341762 |
T |
|
| Q |
414 |
tgcttca |
420 |
Q |
| |
|
|| |||| |
|
|
| T |
41341761 |
tgtttca |
41341755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5805424 - 5805644
Alignment:
| Q |
18 |
aatactgtggctttgattatggtatcagaatcaaatccttcaattgttgttccatcaaacaatgaaagcatcacatccatgaagtcttgatgattccgat |
117 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||| |||||||| ||||||||||||| ||||||||| | |||||||||||||||||||| | | || |
|
|
| T |
5805424 |
aatattgtggctttgatcatggtatcacaatcaaacccttcaatagttgttccatcaagcaatgaaagtaacacatccatgaagtcttgatcttcaccat |
5805523 |
T |
|
| Q |
118 |
caacctccttcgcacccaaactccttttatggcggtgctcctccaacaaatcacctaaaatcttgtccaattctttagaagttgctttcatggccttcac |
217 |
Q |
| |
|
||| |||| ||| |||| | |||||||||||| |||||| |||| ||||||||||| | |||||||| ||||||||| | ||||||||||| || |
|
|
| T |
5805524 |
caa---ccttttcactcaaagttcttttatggcggcgctcctttaacatctcacctaaaatttcatccaattccttagaagtttcattcatggcctttac |
5805620 |
T |
|
| Q |
218 |
atggccaccaaaatcaaaccattt |
241 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
5805621 |
atgaccaccaaaatcaaaccattt |
5805644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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