View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_high_6 (Length: 398)
Name: NF11406_high_6
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 35794751 - 35795111
Alignment:
| Q |
11 |
cacagacaggtatgagataacaataattcttagcatcaattaataataataatcctttttgtggggacaaatattggagcactagttgtggttcactaaa |
110 |
Q |
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| T |
35794751 |
cacacacaggtatgagataacaataattcttaacatcaattaataataataatcctttttgtggggacaaatattggagcactagttgtggttcactaaa |
35794850 |
T |
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| Q |
111 |
tgagaatatttatagtataaattggcataaaaagaagtgaagttatggtcatcaattatatataccattagtacctttgttccatgagaagttattaaat |
210 |
Q |
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| T |
35794851 |
tgagaatatttatagtataaattggcataaaaagaagtgaagttgtggtcatcaattatatatacc---------tttgttccatgagaagttattaaat |
35794941 |
T |
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| Q |
211 |
ttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccacagaggagcacccaggacctgcaacaacaa |
310 |
Q |
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| T |
35794942 |
ttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccacagaggagcacccaggacctgcaacaacaa |
35795041 |
T |
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| Q |
311 |
atcatcttgtcacctttgcagagaacatatatcatgtgtaccaacagctaatgaaatcagcagtgttgta |
380 |
Q |
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| T |
35795042 |
atcatcttgtcacctttgcagagaacatatatcatgtgtaccaacagctaatgaaatcagcagtgttgta |
35795111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 307
Target Start/End: Complemental strand, 3340261 - 3340150
Alignment:
| Q |
190 |
ttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccacagaggagc |
289 |
Q |
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| T |
3340261 |
ttccatgagaagttattaaatttaagtcctttgccatcagtgt------ccactaaaaatgggccaatctcttgtgttgctccatatccaacagatgagc |
3340168 |
T |
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| Q |
290 |
acccaggacctgcaacaa |
307 |
Q |
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| T |
3340167 |
atccaggacctgtaacaa |
3340150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 3332691 - 3332578
Alignment:
| Q |
182 |
tacctttgttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccatatcccac |
281 |
Q |
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|||||||||||||||||||||| |||||||| || || | |||||| | | |||||||||||||||||||||||||||||||||||||||| || |
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| T |
3332691 |
tacctttgttccatgagaagttgttaaatttgagacccttgccatcagtgt------ccactaaaaatggaccaatctcttgtgttgctccatatccaac |
3332598 |
T |
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| Q |
282 |
agaggagcacccaggacctg |
301 |
Q |
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||| ||||| |||||||||| |
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| T |
3332597 |
agatgagcatccaggacctg |
3332578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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