View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_10 (Length: 372)
Name: NF11406_low_10
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 12795270 - 12794931
Alignment:
| Q |
18 |
cagagactgaataa-cccaccagtgaatcctccaaactgaacagaccgccaactgaccaatcaaatgtcaaaaacgaccagaaatggctgagttatacac |
116 |
Q |
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| T |
12795270 |
cagaaactgaataaacccattagtgaatcctccaaactgaacagaccgccaactgaccaatcaaacgtcaaaaatgaccagaaatggctgagttatacac |
12795171 |
T |
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| Q |
117 |
atattttgttcaactctagtttgaggtttgtggcccgaaattgatcgaactcatttgatgcacaactatagcacgttcactgttgtgaattctacctatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
12795170 |
atattttgttcaactctagtttgaggtttgtggcccgaaattgaccgaactcgtttgatgcacaaccatagtacgttcactgttgtgaattctacctatc |
12795071 |
T |
|
| Q |
217 |
tatatttatgttgggaatttattcctcctttttactcggggaggtgggaaaagtgtggaaaaattgtgatgtttcaaaagtgatagtgtttttgtagcaa |
316 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12795070 |
tatatttatgtcgggaatttattcctcctttttaatcggggaggtgggaaaagtgtggaaacgttgtgatgtttcaaaagtgatagtgtttttgtagcaa |
12794971 |
T |
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| Q |
317 |
ttgaatttccatttgttatcctctagagtgaacttcttca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
12794970 |
ttgaatttccatttgttatcctctagagtgaacttcttca |
12794931 |
T |
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