View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_11 (Length: 372)
Name: NF11406_low_11
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 45746977 - 45747230
Alignment:
| Q |
26 |
catacgattcaagctcttgaatttgattaggagtgtgtctgtggtatctcttcttcctcttgcgctgaccatcatcaccaccatcctgatcatcaccaga |
125 |
Q |
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| T |
45746977 |
catacgattcaagctcttgaatttgattaggagtgtgtctgtggtatctcttcttcctcttgcgctgaccatcatcaccaccatcctgatcatcaccaga |
45747076 |
T |
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| Q |
126 |
taatccttcaagatcaaagttatcgcttccggaccggctttcatactcatcttctctcattctcccaagcagaccagtatctaaactatcaccagtgaga |
225 |
Q |
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| T |
45747077 |
taatccttcaagatcaaagttatcgcttccggaccggctttcatactcatcttctctcattctcccaagcagaccagtatctaaactatcaccagtgaga |
45747176 |
T |
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| Q |
226 |
ccaatctcactctgcccctccatttttctttgctgtagaaaacaatctcatcag |
279 |
Q |
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| T |
45747177 |
ccaatctcactctgcccctccatttttctttgctgtagaaaacaatctcatcag |
45747230 |
T |
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Back To:
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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 6613722 - 6613827
Alignment:
| Q |
138 |
atcaaagttatcgcttccggaccggctttcatactcatcttctctcattctcccaagcagaccagtatctaaactatcaccagtgagaccaatctcactc |
237 |
Q |
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| T |
6613722 |
atcaaagttatcgcttccggaccgactttcatacttatcctctctcattctcccaagcagaccagtatctaaactatcactagtgagaccaatctcactc |
6613821 |
T |
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| Q |
238 |
tgcccc |
243 |
Q |
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|||||| |
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| T |
6613822 |
tgcccc |
6613827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 12327260 - 12327310
Alignment:
| Q |
33 |
ttcaagctcttgaatttgattaggagtgtgtctgtggtatctcttcttcct |
83 |
Q |
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||||||||||||||| || | ||||||||||| ||| |||||||||||||| |
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| T |
12327260 |
ttcaagctcttgaatctgttgaggagtgtgtcggtgatatctcttcttcct |
12327310 |
T |
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