View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_low_12 (Length: 355)

Name: NF11406_low_12
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_low_12
NF11406_low_12
[»] chr8 (2 HSPs)
chr8 (1-338)||(32526172-32526509)
chr8 (193-247)||(26765012-26765066)
[»] chr1 (7 HSPs)
chr1 (1-316)||(6838092-6838407)
chr1 (13-316)||(28599898-28600200)
chr1 (58-178)||(8976984-8977104)
chr1 (185-316)||(8976652-8976783)
chr1 (211-316)||(6385454-6385559)
chr1 (193-247)||(9794227-9794281)
chr1 (193-247)||(45997600-45997654)
[»] chr5 (1 HSPs)
chr5 (1-316)||(20082628-20082936)
[»] chr3 (2 HSPs)
chr3 (9-316)||(2803240-2803533)
chr3 (193-247)||(26711466-26711520)
[»] chr7 (1 HSPs)
chr7 (193-247)||(35929388-35929442)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 32526172 - 32526509
Alignment:
Q  1 tgattgatagtggttgtaccaaccacatgacatataataaggatttattcaggggactaagcaatgcaaactcaacaaaagttcgggttggaaatggcaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  32526172 tgattgatagtggttgtaccaaccacatgacacataataaggatttaatcagggaactaaacaatgcaaactcaacaaaagttcgggttggaaatggcaa 32526271  T
Q  101 ttacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaagttaatttctgatgtgttgtacgtccatgaaattgatcagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  32526272 ttacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattcaggtacaaagttaaattctgatgtgttgtacgtccctgaaattgatcagaat 32526371  T
Q  201 ttgttaagtgttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaatacattttcaaag 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32526372 ttgttaagtgttgggcaattacttgaaagaggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaagacattttcaaag 32526471  T
Q  301 taaaaatgagaggaaannnnnnngctctaaatccattg 338  Q
    ||||||||||||||||       |||||||||||||||    
T  32526472 taaaaatgagaggaaaaagttttgctctaaatccattg 32526509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 26765012 - 26765066
Alignment:
Q  193 atcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgtt 247  Q
    |||| ||| |||| |||||||||||||||||||||| |||||| |||||||||||    
T  26765012 atcaaaatctgttgagtgttgggcaattacttgaaaaaggttacaaagtgttgtt 26765066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 6838407 - 6838092
Alignment:
Q  1 tgattgatagtggttgtaccaaccacatgacatataataaggatttattcaggggactaagcaatgcaaactcaacaaaagttcgggttggaaatggcaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  6838407 tgattgatagtggttgtaccaaccacatgacacataataaggattttttcagggaactaatcaatgcaaactcaacaaaagttcgggttggaaatggcaa 6838308  T
Q  101 ttacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaagttaatttctgatgtgttgtacgtccatgaaattgatcagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6838307 ttacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattctggtacaaagttaatttctgatgtgttgtacgtccctgaaattgatcagaat 6838208  T
Q  201 ttgttaagtgttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaatacattttcaaag 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6838207 ttgttaagtgttgggcaattacttgaaagaggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaagacattttcaaag 6838108  T
Q  301 taaaaatgagaggaaa 316  Q
    ||||||||||||||||    
T  6838107 taaaaatgagaggaaa 6838092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 28600200 - 28599898
Alignment:
Q  13 gttgtaccaaccacatgacatataataaggatttattcaggggactaagcaatgcaaactcaacaaaagttcgggttggaaatggcaattacattgctgt 112  Q
    ||||||| |||||||||||| |||| |||||||||||||||  | ||| |  |||||  |||  |||||||||| ||||||||| ||| || | || |||    
T  28600200 gttgtactaaccacatgacacataacaaggatttattcaggaaagtaaacggtgcaagttcattaaaagttcgg-ttggaaatgacaactatactgttgt 28600102  T
Q  113 gaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaagttaatttctgatgtgttgtacgtccatgaaattgatcagaatttgttaagtgtt 212  Q
     ||||  |||||||||||||||||| |||||||||||  ||||||||| ||| | |||||||||||||||| |||||||||| | ||| | | ||||||     
T  28600101 aaaagttaaaggaacaatagcaatcgcaacctattcaattacaaagttcattgccgatgtgttgtacgtccctgaaattgataaaaatatttgaagtgtc 28600002  T
Q  213 gggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaatacattttcaaagtaaaaatgagag 312  Q
    ||||||||  ||||||  || |||||||| ||||| ||||   |||| | ||||||||| ||| || |||| ||| |  |||||| ||||||||||||||    
T  28600001 gggcaatttattgaaaagggctataaagttttgtttgaaacaaaaagattcttgattaacgatggtaatggtaaagatgttttcagagtaaaaatgagag 28599902  T
Q  313 gaaa 316  Q
    ||||    
T  28599901 gaaa 28599898  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 8977104 - 8976984
Alignment:
Q  58 taagcaatgcaaactcaacaaaagttcgggttggaaatggcaattacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaa 157  Q
    ||||||||||||||||| | |||||| |||||||||||| ||| ||||||| ||||||||||||   | |||||| |||||||||||||||| |||||||    
T  8977104 taagcaatgcaaactcatcgaaagtttgggttggaaatgacaactacattgatgtgaaaggaaacataccaatagaaatctcaacctattcaggtacaaa 8977005  T
Q  158 gttaatttctgatgtgttgta 178  Q
     ||||||||||||||||||||    
T  8977004 attaatttctgatgtgttgta 8976984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 316
Target Start/End: Complemental strand, 8976783 - 8976652
Alignment:
Q  185 tgaaattgatcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggc 284  Q
    ||||| |||||| |||||||||||||||| | ||||| || ||| |||||||||||| ||||||||||  | ||||| |||||||| ||||||||||||     
T  8976783 tgaaaatgatcataatttgttaagtgttgaggaattaattcaaagaggttataaagttttgttcgaaagcgtaagctacttgattatagatagtgatggt 8976684  T
Q  285 aaatacattttcaaagtaaaaatgagaggaaa 316  Q
    ||| |||| |||||||||||||||||| ||||    
T  8976683 aaagacatgttcaaagtaaaaatgagatgaaa 8976652  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 6385454 - 6385559
Alignment:
Q  211 ttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaatacattttcaaagtaaaaatgag 310  Q
    ||||| ||||| ||||||  || |||||||| ||||| |||||||||||||| || ||||||||||||||||||||||  | ||||||||||||||||||    
T  6385454 ttgggaaattaattgaaaagggatataaagttttgtttgaaaatgaaagctgtttaattaaagatagtgatggcaaatgtactttcaaagtaaaaatgag 6385553  T
Q  311 aggaaa 316  Q
    ||||||    
T  6385554 aggaaa 6385559  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 9794281 - 9794227
Alignment:
Q  193 atcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgtt 247  Q
    |||| ||| |||| |||||||||||||||||||||| |||||| |||||||||||    
T  9794281 atcaaaatctgttgagtgttgggcaattacttgaaaaaggttacaaagtgttgtt 9794227  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 45997654 - 45997600
Alignment:
Q  193 atcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgtt 247  Q
    |||| ||| |||| |||||||||||||||||||||| | |||| |||||||||||    
T  45997654 atcaaaatctgttgagtgttgggcaattacttgaaaaatgttacaaagtgttgtt 45997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 20082936 - 20082628
Alignment:
Q  1 tgattgatagtggttgtaccaaccacatgacatataataaggatttattcaggggactaagcaatgcaaactcaacaaaagttcgggttggaaatggcaa 100  Q
    ||||||| | ||||||||| ||||| |||||| |||| ||||||||||| |||| ||||||||||||||| | | ||||||||| |||| ||||||| ||    
T  20082936 tgattgacaatggttgtactaaccaaatgacacataacaaggatttatttagggaactaagcaatgcaaa-taatcaaaagttcaggttagaaatggaaa 20082838  T
Q  101 ttacattgctgtgaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaagttaatttctgatgtgttgtacgtccatgaaattgatcagaat 200  Q
      |||||| |||||||||||||      || | |||||||||||||||| ||||||||| | ||| || |||||||||||| | | |||||||||  |||    
T  20082837 acacattgttgtgaaaggaaaa------atcgaaatctcaacctattcaagtacaaagtaagtttttgttgtgttgtacgttcctaaaattgatcgaaat 20082744  T
Q  201 ttgttaagtgttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgat-ggcaaatacattttcaaa 299  Q
      ||||||||||||||||||| || ||| ||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| || | | | |  ||||||    
T  20082743 aggttaagtgttgggcaattaattcaaagaggttat-aagttttgttagaaaacgaaagctgcttgattaaagatagtgatcggaagaaaaaaattcaaa 20082645  T
Q  300 gtaaaaatgagaggaaa 316  Q
    |||||||||||||||||    
T  20082644 gtaaaaatgagaggaaa 20082628  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 2803240 - 2803533
Alignment:
Q  9 agtggttgtaccaaccacatgacatataataaggatttattcaggggactaagcaatgcaaactcaacaaaagttcgggttggaaatggcaattacattg 108  Q
    ||||||||||| |||| ||||||| ||||   |||||||||||  | |||||||  |||||  ||| | || |||||||||||||||||| | || ||||    
T  2803240 agtggttgtactaaccccatgacacataa---ggatttattcacagaactaagcg-tgcaagttcatcgaatgttcgggttggaaatggccactatattg 2803335  T
Q  109 ctgtgaaaggaaaaggaacaatagcaatctcaacctattcatgtacaaagttaatttctgatgtgttgtacgtccatgaaattgatcagaatttgttaag 208  Q
     ||| |||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| || |||| |||||||||||          |||    
T  2803336 ttgtaaaagaaaaaggaacaatagcaatctcaacctagtcaagtacaaagttcatttctgatgtgttataagtccttgaaattgatc----------aag 2803425  T
Q  209 tgttgggcaattacttgaaataggttataaagtgttgttcgaaaatgaaagctgcttgattaaagatagtgatggcaaatacattttcaaagtaaaaatg 308  Q
    |||||| |||||| ||||||  || |||||| | ||||| ||||| ||||| |||||| |||||||| |||||| |||| ||||||||||||| ||||||    
T  2803426 tgttggtcaattaattgaaaggggctataaaattttgtttgaaaacgaaagttgcttgtttaaagatggtgatgacaaagacattttcaaagtgaaaatg 2803525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 26711520 - 26711466
Alignment:
Q  193 atcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgtt 247  Q
    |||| ||| |||| |||||||||||||||||||||| |||||| |||||||||||    
T  26711520 atcaaaatctgttgagtgttgggcaattacttgaaaaaggttacaaagtgttgtt 26711466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 35929442 - 35929388
Alignment:
Q  193 atcagaatttgttaagtgttgggcaattacttgaaataggttataaagtgttgtt 247  Q
    |||| ||| |||| |||||||||||||||||||||| |||||| |||||||||||    
T  35929442 atcaaaatctgttgagtgttgggcaattacttgaaaaaggttacaaagtgttgtt 35929388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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