View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_13 (Length: 353)
Name: NF11406_low_13
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 45149682 - 45149355
Alignment:
| Q |
20 |
aaagttttaatcagaaaactaagttataaatcaggaatatctaaatgaaaataatatgaagtgaaatatgaagctttgagggaagtagttcctcgcacac |
119 |
Q |
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| T |
45149682 |
aaagttttaatcagaaaactaagttataaaccaggaatatctaaatgaaaataatatgaagtgaaatatgaagctttgagggaagtagttcctccaacac |
45149583 |
T |
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| Q |
120 |
aacagataaggagcactcattcatgcataggtaatttataaataagaaaccaaatacataccatggtaatttcgtcaggtttaaaacctgctgtcttcat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45149582 |
aacagataaggagcactcattcatgcataggtaatttataaataaaaaaccaaatacataccatggtaatttcgtcaggtttaaaacctgctgtcttcat |
45149483 |
T |
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| Q |
220 |
tgaatcaaacaccaataaagcctgtctgccaaatccatgcctagcataaccagctaacattgtgttccaagagatgatatctttcaattgcattctttca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45149482 |
tgaatcaaacaccaataaagcctgtctgccaaatccatgcctagcataaccagctaacattgtgttccaagagatgatatctttcaattgcattctttca |
45149383 |
T |
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| Q |
320 |
aacacatcataggcttcacctatgcttc |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45149382 |
aacacatcataggcttcacctatgcttc |
45149355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 45165886 - 45165759
Alignment:
| Q |
177 |
ataccatggtaatttcgtcaggtttaaaacctgctgtcttcattgaatcaaacaccaataaagcctgtctgccaaatccatgcctagcataaccagctaa |
276 |
Q |
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||||||||||||| || ||||| |||| ||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
45165886 |
ataccatggtaatctcatcaggcttaacacctgctgtcttcatagactcaaataccgttaaagcctgtctgccaaatccatgcctggcatagccagctaa |
45165787 |
T |
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| Q |
277 |
cattgtgttccaagagatgatatctttc |
304 |
Q |
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||| ||||||||||||| || ||||||| |
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| T |
45165786 |
catagtgttccaagagacgacatctttc |
45165759 |
T |
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