View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_low_16 (Length: 286)

Name: NF11406_low_16
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_low_16
NF11406_low_16
[»] chr7 (8 HSPs)
chr7 (1-270)||(6094782-6095051)
chr7 (26-225)||(6089442-6089641)
chr7 (161-233)||(6180990-6181062)
chr7 (162-226)||(6208580-6208644)
chr7 (161-233)||(6213424-6213496)
chr7 (145-233)||(6237872-6237960)
chr7 (32-233)||(6247811-6248012)
chr7 (162-225)||(6106613-6106676)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6095051 - 6094782
Alignment:
Q  1 aatgacattgaggtaaataaattgatcaaagatatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggagaaacattataca 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6095051 aatgacattgaggtaaataaattgatcaaagatatgaaacgacacaagaaagaaaagcctctcattttgtcgactgaatttgttggagaaacattataca 6094952  T
Q  101 taaatatcgaccaagtgttgagacttctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094951 taaatatcgaccaagtgttgagacttctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactct 6094852  T
Q  201 tgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttcttccaatttc 270  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094851 tgtggagaatgaagtaaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttcttccaatttc 6094782  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 6089641 - 6089442
Alignment:
Q  26 tcaaagatatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggagaaacattatacataaatatcgaccaagtgttgagact 125  Q
    ||||||||||||||| ||||||| ||||||| ||||||| |||||| || |||||||||||  || ||||| || | ||||||    ||||| | | |||    
T  6089641 tcaaagatatgaaacgacacaaggaagaaaaacctctcactttgtcgacagaatttgttgggaaagcattagactttaatatcaggaaagtgcttaaact 6089542  T
Q  126 tctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaa 225  Q
    ||||||||| ||| | || ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  6089541 tctagaggatgaccaagtttttgttattggtatatatggaatggggggagtgggaaaaactttacttgcaactctcgtcgagaatgaagtaaaaaggaaa 6089442  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 6181062 - 6180990
Alignment:
Q  161 atggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaacttt 233  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  6181062 atggaatgggaggagtaggaaaaactttacttgcaactctcgtggagaatgaagtaaaaaggaaagcaacttt 6180990  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 6208644 - 6208580
Alignment:
Q  162 tggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaag 226  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6208644 tggaatgggaggagtcggaaaaactttacttgcaactcttgtggagaatgaagtaaaaaggaaag 6208580  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 6213496 - 6213424
Alignment:
Q  161 atggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaacttt 233  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||    
T  6213496 atggaatgggaggagtgggaaaaactttacttgcaactctcgtggaaaatgaagtaaaaaggaaagcaacttt 6213424  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 6237960 - 6237872
Alignment:
Q  145 tttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaacttt 233  Q
    ||||||||||| ||   ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  6237960 tttgttattggcatatgtggaatgggaggagtcggaaaaactttacttgcaactctcgtggagaatgaagtaaaaaggaaagcaacttt 6237872  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 233
Target Start/End: Complemental strand, 6248012 - 6247811
Alignment:
Q  32 atatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggagaaacattatacataaatatcgaccaagtgttgagacttctaga 131  Q
    ||||||||| |||||||||| | |||||| ||| |||||||||||||||||| || |  | |||| |   ||| ||| |  ||||||||| ||  || ||    
T  6248012 atatgaaacgacacaagaaaaagaagcctttcactttgtcaactgaatttgtcggggggagattagatgaaaaaatccataaagtgttgaaacaacttga 6247913  T
Q  132 ggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaact 231  Q
     || ||  | || ||||| ||||| ||  |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  6247912 cgatgataaagtctttgtcattggcatatatggaatgggaggagtaggaaaaactttacatgcaactctcgtggagaatgaagtaaaaaggaaagcaact 6247813  T
Q  232 tt 233  Q
    ||    
T  6247812 tt 6247811  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 6106676 - 6106613
Alignment:
Q  162 tggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaa 225  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||  |||||||||    
T  6106676 tggaatgggaggtgtgggaaaaactttacttgcaactctcgtggagaaggaaggaaaaaggaaa 6106613  T

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