View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_27 (Length: 213)
Name: NF11406_low_27
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 24823344 - 24823539
Alignment:
| Q |
1 |
cacagaccaacacatttcacttctctcttgtctcacatctatcccaaatcaaaacaaaccaaaatttgaaatttgaattcgaatccgaatatgaaccaaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24823344 |
cacacaccaacacatttcacttctctcttgtctcacatctatcccaaatcaaaacaaaccaaaatttgaaatttgaatttgaatccgaatatgaaccaaa |
24823443 |
T |
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| Q |
101 |
atctaagcagtgagaactttagccctagtgcacttgatcaacctacaatagcaactgaaaatatggcagctcgagatgtgttaattgattaaaact |
196 |
Q |
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| T |
24823444 |
atctaagcagtgagaactttagccctagtgcacttgatcaacctacaatagcaactgaaaatatggcagctcgagatgtgttaattgattaaaact |
24823539 |
T |
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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 13813492 - 13813565
Alignment:
| Q |
22 |
tctctcttgtctcacatctatcccaaatcaaaacaaaccaaaatttgaaatttgaattcgaatccgaatatgaa |
95 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
13813492 |
tctctcttctctcacatctatcccaaatcaaaacaaaccaaaatctgaaatttgaatccgaatccgaatctgaa |
13813565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 6435001 - 6434943
Alignment:
| Q |
7 |
ccaacacatttcacttctctcttgtctcacatctatcccaaatcaaaacaaaccaaaat |
65 |
Q |
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||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6435001 |
ccaacacatctcccttctctcttatctcacatctatcccaaatcaaaacaaaccaaaat |
6434943 |
T |
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