View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_4 (Length: 455)
Name: NF11406_low_4
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 128 - 437
Target Start/End: Original strand, 56069678 - 56069983
Alignment:
| Q |
128 |
ggaaacatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgt |
227 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
56069678 |
ggaaaaatcgtcgatgaaattggaaagaaacgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaa----agtgt |
56069773 |
T |
|
| Q |
228 |
gcttaccagtttctgccatttgtggtacacctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccaca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069774 |
gcttaccagtttctgccatttgtggtacacctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccaca |
56069873 |
T |
|
| Q |
328 |
agcacgagggtcaaaattctttgcaacaagaggatttgagaagttgaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaacagcaccgttt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069874 |
agcacgagggtcaaaattctttgcaacaagaggatttgagaagttgaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaacagcaccgttt |
56069973 |
T |
|
| Q |
428 |
atgtttccct |
437 |
Q |
| |
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|||||||||| |
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| T |
56069974 |
atgtttccct |
56069983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 56069533 - 56069644
Alignment:
| Q |
16 |
gacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaat |
115 |
Q |
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| T |
56069533 |
gacatcagggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaat |
56069632 |
T |
|
| Q |
116 |
ttccataattgt |
127 |
Q |
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|||||||||||| |
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| T |
56069633 |
ttccataattgt |
56069644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 173 - 438
Target Start/End: Complemental strand, 38398594 - 38398338
Alignment:
| Q |
173 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtgatgttttg |
272 |
Q |
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|||||||||| |||||||||||| | |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagattaa----agtgt-cttaccagcttctgccaattgtggtacacctctgtgatgttttg |
38398500 |
T |
|
| Q |
273 |
cttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaagcacgagggtcaaaattctttgcaacaagaggatttgagaagtt |
372 |
Q |
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|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398499 |
cttcttccattcgactaaatcaaaaacattcatac----catatgcccatccacaagcacgagggtcaaaattctttgcaacaagaggatttgagaagtt |
38398404 |
T |
|
| Q |
373 |
gaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaacagcaccgtttatgtttccctt |
438 |
Q |
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||||||| |||||| |||||||| || || ||||||||| |||||||| |||||||| ||||| |
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| T |
38398403 |
aaggtaactatcaaatcgatggaatttttttgtacaagtttcgacagcaccatttatgttaccctt |
38398338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 38398799 - 38398695
Alignment:
| Q |
23 |
gggttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttccata |
122 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
38398799 |
gggttgtagccaagacctaagacatgccaagatcggttcagcgggaacgtgcgtttccagaatgttataagaccaggtggcagtgttcctaacttccata |
38398700 |
T |
|
| Q |
123 |
attgt |
127 |
Q |
| |
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|||| |
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| T |
38398699 |
gttgt |
38398695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 229 - 420
Target Start/End: Complemental strand, 10170667 - 10170480
Alignment:
| Q |
229 |
cttaccagtttctgccatttgtggtacacctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaa |
328 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||| | |||| ||||| |||||| |
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| T |
10170667 |
cttaccaaattctgccagttgtggtacacctctgtgatcttttgcctcttccattggactaaatcaaatacattcattc----cgtaggcccacccacaa |
10170572 |
T |
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| Q |
329 |
gcacgagggtcaaaattctttgcaacaagaggatttgagaagttgaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaacagc |
420 |
Q |
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||| |||| |||||||||||||||| |||||||||||||||||| || |||| |||||| |||||||||||| || |||||||||| ||||| |
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| T |
10170571 |
gcatgaggatcaaaattctttgcaataagaggatttgagaagttcagataacgatcaaatcgatggaaactttctccacaagtttctacagc |
10170480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 10171107 - 10171013
Alignment:
| Q |
26 |
ttgtagccaagacccaagacgtgccaggatcggttcagcgggaaagtatgtttccagaatgtcataagaccaggtggcagtgttcctaatttcca |
120 |
Q |
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||||||||||||||||| || ||||| | | |||||| |||||||| |||||||||| || || ||||| ||||||||||||||||| ||||| |
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| T |
10171107 |
ttgtagccaagacccaacacatgccacgctttgttcagtgggaaagtgcgtttccagaaggttatgagacctggtggcagtgttcctaacttcca |
10171013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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