View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_low_6 (Length: 426)

Name: NF11406_low_6
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_low_6
NF11406_low_6
[»] chr7 (5 HSPs)
chr7 (70-226)||(35635792-35635948)
chr7 (18-226)||(35629320-35629530)
chr7 (271-414)||(35635993-35636136)
chr7 (283-381)||(35629589-35629687)
chr7 (282-403)||(35632742-35632863)
[»] chr3 (7 HSPs)
chr3 (282-421)||(10299118-10299257)
chr3 (273-383)||(10338456-10338566)
chr3 (282-421)||(10319550-10319689)
chr3 (282-421)||(10336666-10336805)
chr3 (94-184)||(10299366-10299456)
chr3 (94-184)||(10319798-10319888)
chr3 (94-184)||(10336914-10337004)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 35635792 - 35635948
Alignment:
Q  70 ttagcagccgctttgtctagaacagtactcacaagccttcttgcaattccctgaaaaatccaccatagcataactaaatcaaaagccagcaaacataaca 169  Q
    |||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  35635792 ttagcagccgcttgtgctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataaca 35635891  T
Q  170 gtaatgactaaaattcgtctttgatgcaaaaaacacaaatatgtattttcattttat 226  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  35635892 gtaatgactcaaattcgtctttgatgcaaaaaacagaaatatgtattttcattttat 35635948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35629320 - 35629530
Alignment:
Q  18 atcgccacatcccagatttgcttgcatcatgtcattatagcaaacattcttcttagcagccgctttgtctagaacagtactcacaagccttcttgcaatt 117  Q
    |||||||| ||||||||| || |||||||||  |||| ||  |||||||   ||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  35629320 atcgccacgtcccagattagcatgcatcatgctattacaggtaacattcccattagcagccgctttcgctagaacagtactcacaagcctttttgcaatt 35629419  T
Q  118 ccctgaaaaatccaccatagcata--actaaatcaaaagccagcaaacataacagtaatgactaaaattcgtctttgatgcaaaaaacacaaatatgtat 215  Q
    ||||| ||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||  |||    
T  35629420 ccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaaattcgtctttgatgcaaaaaacacaaatacttat 35629519  T
Q  216 tttcattttat 226  Q
    |||||||||||    
T  35629520 tttcattttat 35629530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 35635993 - 35636136
Alignment:
Q  271 tcatataaatcgatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaat 370  Q
    ||||| ||||||||||| ||||| || ||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  35635993 tcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaat 35636092  T
Q  371 atcagaaacttatcgttctctgataaatctctaaaatgcatctc 414  Q
    |||||||||||||||||||||| |||||||||| || |||||||    
T  35636093 atcagaaacttatcgttctctgttaaatctctagaacgcatctc 35636136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 35629589 - 35629687
Alignment:
Q  283 atatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatatcagaaactt 381  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  35629589 atatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatcagaagcaaatataagaaactt 35629687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 282 - 403
Target Start/End: Original strand, 35632742 - 35632863
Alignment:
Q  282 gatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatatcagaaactt 381  Q
    ||||||||||||||| |||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  ||| |||||||| ||||||||    
T  35632742 gatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactcccaaagtccaacagacgcaaatataagaaactt 35632841  T
Q  382 atcgttctctgataaatctcta 403  Q
    ||| ||||||| |||| |||||    
T  35632842 atcattctctgttaaaactcta 35632863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 421
Target Start/End: Complemental strand, 10299257 - 10299118
Alignment:
Q  282 gatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatatcagaaactt 381  Q
    ||||||||||||||| |||  |||| ||||||||||||||| | |||| || |||||||||||| ||||||||||||| |||||||||||| | ||||||    
T  10299257 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 10299158  T
Q  382 atcgttctctgataaatctctaaaatgcatctctgcttct 421  Q
    ||| || |||| |||| |||||  ||||||||||| ||||    
T  10299157 atcattatctgttaaaactctagtatgcatctctggttct 10299118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 10338566 - 10338456
Alignment:
Q  273 atataaatcgatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatat 372  Q
    |||| ||| ||||||||||||||| |||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||  ||| ||||||||    
T  10338566 atattaatggatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatat 10338467  T
Q  373 cagaaacttat 383  Q
      |||||||||    
T  10338466 atgaaacttat 10338456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 421
Target Start/End: Complemental strand, 10319689 - 10319550
Alignment:
Q  282 gatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatatcagaaactt 381  Q
    ||||||||||||||| |||  |||| ||||||||||||||| | |||| || |||||||||||| ||||||||||||| |||||||||||| | |||||     
T  10319689 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10319590  T
Q  382 atcgttctctgataaatctctaaaatgcatctctgcttct 421  Q
    ||| || |||| |||| |||||  ||||||||||| ||||    
T  10319589 atcattatctgttaaaactctagtatgcatctctggttct 10319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 282 - 421
Target Start/End: Complemental strand, 10336805 - 10336666
Alignment:
Q  282 gatatatacatacatctctttgattgttttgaacaatttcaactgcttgttcatttgacaagaactcccaaagtccattagaagcaaatatcagaaactt 381  Q
    ||||||||||||||| |||  |||| ||| ||||||||||| | |||| || |||||||||||| ||||||||||||| |||||||||||| | |||||     
T  10336805 gatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactg 10336706  T
Q  382 atcgttctctgataaatctctaaaatgcatctctgcttct 421  Q
    ||| || |||| |||| |||||  ||||||||||| ||||    
T  10336705 atcattatctgttaaaactctagtatgcatctctggttct 10336666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 10299456 - 10299366
Alignment:
Q  94 gtactcacaagccttcttgcaattccctgaaaaatccaccatagcataactaaatcaaaagccagcaaacataacagtaatgactaaaatt 184  Q
    ||||||| ||||||| ||||||||||||| ||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |||| |||||    
T  10299456 gtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10299366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 10319888 - 10319798
Alignment:
Q  94 gtactcacaagccttcttgcaattccctgaaaaatccaccatagcataactaaatcaaaagccagcaaacataacagtaatgactaaaatt 184  Q
    ||||||| ||||||| | ||||||||||| ||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |||| |||||    
T  10319888 gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10319798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 10337004 - 10336914
Alignment:
Q  94 gtactcacaagccttcttgcaattccctgaaaaatccaccatagcataactaaatcaaaagccagcaaacataacagtaatgactaaaatt 184  Q
    ||||||| ||||||| | ||||||||||| ||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |||| |||||    
T  10337004 gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 10336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University