View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11406_low_7 (Length: 421)

Name: NF11406_low_7
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11406_low_7
NF11406_low_7
[»] chr6 (15 HSPs)
chr6 (19-419)||(4265897-4266298)
chr6 (298-414)||(4458598-4458718)
chr6 (21-177)||(4471047-4471203)
chr6 (18-260)||(4627197-4627439)
chr6 (40-261)||(4623353-4623574)
chr6 (18-260)||(4259015-4259257)
chr6 (34-162)||(4482010-4482138)
chr6 (34-162)||(4575600-4575728)
chr6 (34-160)||(4561809-4561935)
chr6 (18-162)||(4298337-4298481)
chr6 (19-174)||(4462343-4462498)
chr6 (76-162)||(3173148-3173234)
chr6 (76-190)||(4489094-4489208)
chr6 (84-162)||(4255544-4255622)
chr6 (222-259)||(4458816-4458853)
[»] chr5 (1 HSPs)
chr5 (19-414)||(24103978-24104383)
[»] chr7 (1 HSPs)
chr7 (18-174)||(3087878-3088034)
[»] scaffold0477 (1 HSPs)
scaffold0477 (39-260)||(3382-3603)
[»] scaffold0288 (1 HSPs)
scaffold0288 (41-166)||(2316-2441)


Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 4265897 - 4266298
Alignment:
19 gaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4265897 gaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttac 4265996  T
119 atgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttccta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4265997 atgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttccta 4266096  T
219 ctctgattcgaaaaggtctactaccactcaaaggtaacaattatgatccnnnnnnnnnnnnaagagaaatgtgcatgaatctatatatgtgatcacgttt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
4266097 ctctgattcgaaaaggtctactaccactcaaaggtaacaattatgatccttttttctttttaagagaaatgtgcatgaatctatatatgtgatcacgttt 4266196  T
319 agggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacaacacaa-cacaattattactgggaacatgatttaaaatcttgatgtgtgtctg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
4266197 agggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacaacacaaccacaattattactgggaacatgatttaaaatcttgatgtgtgtgtg 4266296  T
418 tg 419  Q
    ||    
4266297 tg 4266298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 298 - 414
Target Start/End: Complemental strand, 4458718 - 4458598
Alignment:
298 tctatatatgtgatcacgtttagggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacaacacaa-cacaattat---tactgggaacatg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||   || |   ||||||    
4458718 tctatatatgtgatcacgtttagggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacgacacaaccacaattattaatattaaaaacatg 4458619  T
394 atttaaaatcttgatgtgtgt 414  Q
    |||||||||||||||||||||    
4458618 atttaaaatcttgatgtgtgt 4458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 4471203 - 4471047
Alignment:
21 acttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacat 120  Q
    |||||||||||||||||| ||||||||||||||||||| ||   ||||||| || |||| |||| || ||| |||||||| |  |||| |||||||||||    
4471203 acttccttcaaccctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacat 4471104  T
121 gccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctcc 177  Q
    ||| |||||| |||||||||| ||||||| ||||||||||||| || ||||||||||    
4471103 gccatttacagtagatgctgctgaagaacgtgcactcccaatcgttctcttttctcc 4471047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 4627439 - 4627197
Alignment:
18 agaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgtta 117  Q
    ||||||||||||| ||||||| |||||||||| ||| ||||||| | || |||| || |||| || || ||||| |||||||||| ||||| |||||||     
4627439 agaacttccttcagccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgttt 4627340  T
118 catgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttcct 217  Q
     ||| | ||||| ||| | ||||| ||||||||||||||||||||   | |||||||| | |  | ||||| | | ||||||| || ||| || |||| |    
4627339 aatgtcatttaccatacaagctgctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttgtctattttgcactttcgt 4627240  T
218 actctgattcgaaaaggtctactaccactcaaaggtaacaatt 260  Q
    || ||| ||  |||||||||| |||||||||||||||||||||    
4627239 acactgtttgaaaaaggtctaataccactcaaaggtaacaatt 4627197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 261
Target Start/End: Complemental strand, 4623574 - 4623353
Alignment:
40 tgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgct 139  Q
    |||||||||| | | ||||||| | ||||||| || |||| || |||||||| |||||||||| |||||||||||||||||| | ||||||||| | |||    
4623574 tgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagct 4623475  T
140 gcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttcctactctgattcgaaaaggtctac 239  Q
    || ||||| ||||||||||||||  ||||||| || |||   | ||||  ||| ||||||| |  ||| || |||| ||| ||| ||   |||||||||     
4623474 gctgaagagcatgcactcccaattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaa 4623375  T
240 taccactcaaaggtaacaatta 261  Q
    ||||||||||||||||||||||    
4623374 taccactcaaaggtaacaatta 4623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4259015 - 4259257
Alignment:
18 agaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgtta 117  Q
    ||||||||||||| ||||||| |||||||||| ||| ||||||  | || |||| |  |||| || |||||||  |||||||||| ||||| ||||||||    
4259015 agaacttccttcagccctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgtta 4259114  T
118 catgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttcct 217  Q
    |||| | ||||  ||| | ||||| ||||| ||||||||||||||  ||||||| ||||||   | ||||  ||| ||||||| |  ||| || |||| |    
4259115 catgtcatttagtatacaagctgctgaagagcatgcactcccaattgttttcttctctccagctagtgcaagtaccttcttgtctgttttacactttcgt 4259214  T
218 actctgattcgaaaaggtctactaccactcaaaggtaacaatt 260  Q
    || ||| ||  |||||||||| |||||||||||||||||||||    
4259215 acactgtttgaaaaaggtctaataccactcaaaggtaacaatt 4259257  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 4482138 - 4482010
Alignment:
34 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 133  Q
    |||||||||| ||||  ||| ||||||| ||||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||||| |||||| ||    
4482138 ctttgatgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttctgattgctacatgccatttacagta 4482039  T
134 gatgctgcggaagaacatgcactcccaat 162  Q
    |||||||| ||||||||||||||||||||    
4482038 gatgctgccgaagaacatgcactcccaat 4482010  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 4575728 - 4575600
Alignment:
34 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 133  Q
    |||||||||||||||| ||| ||||||  | ||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||||| |||||| ||    
4575728 ctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagta 4575629  T
134 gatgctgcggaagaacatgcactcccaat 162  Q
    |||||||| ||||||||||| ||||||||    
4575628 gatgctgctgaagaacatgccctcccaat 4575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 4561935 - 4561809
Alignment:
34 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 133  Q
    |||||||||||||||| ||| ||||||  | ||||||| || |||| |||| || ||| | |||||||| ||||| ||||| |||||||| |||||| ||    
4561935 ctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagta 4561836  T
134 gatgctgcggaagaacatgcactccca 160  Q
    | |||||| ||||||||||||||||||    
4561835 gctgctgctgaagaacatgcactccca 4561809  T

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Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 4298337 - 4298481
Alignment:
18 agaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgtta 117  Q
    ||||||||||||| ||||||| |||||||||| ||| ||||| | | ||||||| || |||| || | |||||| |||||||||| ||| | |||| ||     
4298337 agaacttccttcagccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgatttttt 4298436  T
118 catgccttttacaatagatgctgcggaagaacatgcactcccaat 162  Q
     ||| | ||||| ||| | ||||||||||||||||||||||||||    
4298437 aatgtcatttaccatacaagctgcggaagaacatgcactcccaat 4298481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 4462498 - 4462343
Alignment:
19 gaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttac 118  Q
    ||||||| |||||||||||  |||||||||||| |||||| ||   ||||||| ||  | | |||| || ||  |||||||| | ||||| |||||||||    
4462498 gaacttcattcaaccctttagtgaacttcttacaagacttgatgcctctgccactgccgatcttatccctccggttacttgcatagtttctgattgttac 4462399  T
119 atgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttc 174  Q
    ||||| |||||| | ||||| || ||| ||| ||||||||||||| || |||||||    
4462398 atgccatttacagtggatgccgctgaacaacgtgcactcccaatcgttctcttttc 4462343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 3173234 - 3173148
Alignment:
76 tggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaat 162  Q
    |||| |||| || ||| |||||||||| ||||||||||| || ||||| |||||| |||||| ||| ||||||||||| ||||||||    
3173234 tggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgttgctgaagaacatgctctcccaat 3173148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 4489094 - 4489208
Alignment:
76 tggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttct 175  Q
    |||| |||| || ||| |||||||||| ||||| |||||  | ||| | |||||| |||||||||| ||||||||||||||||||||  || |||||||     
4489094 tggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctgaagaacatgcactcccaattgttctcttttcc 4489193  T
176 ccatgcaatgcatct 190  Q
    ||||| | |||||||    
4489194 ccatgtagtgcatct 4489208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 4255544 - 4255622
Alignment:
84 ttccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaat 162  Q
    |||||| | |||||||||| ||||| |||||||||||| | ||||| ||| | ||||| ||||| ||||||||||||||    
4255544 ttccactagttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaat 4255622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 4458853 - 4458816
Alignment:
222 tgattcgaaaaggtctactaccactcaaaggtaacaat 259  Q
    ||||| ||||||||||||||||||||||||||||||||    
4458853 tgattggaaaaggtctactaccactcaaaggtaacaat 4458816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 24104383 - 24103978
Alignment:
19 gaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttac 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||    
24104383 gaacttccttcagccctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttac 24104284  T
119 atgccttttaca----atagatgctgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaattt 214  Q
    ||||| ||||||    || |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |    
24104283 atgccatttacagttgatcgatgctgttgaagaacatgcactcccaattcttttcttttctccatgcaatgcatctaccttcttgtgtacttttcaatat 24104184  T
215 cctactctgattcgaaaaggtctactaccactcaaaggtaacaattatgatccnnnnnnnnnnnnaagagaaatgtgcatgaatctatat-----atgtg 309  Q
    |||| |||||||| |||||||||| |||||||||||||||| |||||||||||            ||||||||||||||||| |||||||     || ||    
24104183 cctaatctgattcaaaaaggtctagtaccactcaaaggtaaaaattatgatccttttttctttttaagagaaatgtgcatgattctatatatttaatttg 24104084  T
310 atcacgtttagggctgcatcagtcgcattgcgattatgtgcatcatcaaaatgacaacacaa-cacaattattactgggaacatgatttaaaatcttgat 408  Q
    |||||  ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||  ||    
24104083 atcacacttagggctgcatcagtcgcatggcaattatgtgcatcattaaaatgacaacacaaccacaattattattggaaacatgatttaaaatctctat 24103984  T
409 gtgtgt 414  Q
    ||||||    
24103983 gtgtgt 24103978  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 3088034 - 3087878
Alignment:
18 agaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgtta 117  Q
    |||||||| |||||||||||| ||||||||||  | || ||||| | |||||| ||| |||| ||||||||||| |||||||||| ||  | |||| |||    
3088034 agaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgattttta 3087935  T
118 catgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttc 174  Q
    |||||| ||||| ||| | | ||| |||||  ||||||||||||||||| |||||||    
3087934 catgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttc 3087878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 3382 - 3603
Alignment:
39 atgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgc 138  Q
    |||||||||||  || ||||||| | ||||||| || |||| || |||||| | |||||||| | ||  | |||||||||||||| ||||| ||| | ||    
3382 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagc 3481  T
139 tgcggaagaacatgcactcccaatccttttcttttctccatgcaatgcatctacgttcttgtgtacttttcaatttcctactctgattcgaaaaggtcta 238  Q
    ||| ||||||||||||||||||||  || |||||||  |  ||| ||||| | | ||||||| | |||| || |||  ||| ||| ||| |||||| |||    
3482 tgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgttctttcttgtctgctttacacttttgtacactgtttcaaaaaggacta 3581  T
239 ctaccactcaaaggtaacaatt 260  Q
     |||||||||||||||| ||||    
3582 ataccactcaaaggtaaaaatt 3603  T

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Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 2316 - 2441
Alignment:
41 gaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctg 140  Q
    ||||||||| |||||||| |  | |||||||||  |||| |||| || ||| | ||| |||| ||||| |||||||||||| | ||||| ||| | ||||    
2316 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg 2415  T
141 cggaagaacatgcactcccaatcctt 166  Q
    | |||||| |||||||||||||||||    
2416 ctgaagaatatgcactcccaatcctt 2441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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