View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11406_low_9 (Length: 380)
Name: NF11406_low_9
Description: NF11406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11406_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 23699391 - 23699740
Alignment:
| Q |
19 |
gaaataagtccacaaaatagtcctttgaaactttacatatgccctcctgctcttgtattacaattccatcagaattgcacagttttacaatctgatttca |
118 |
Q |
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| T |
23699391 |
gaaataagtccacaaaatagtcctttgaaactttacatatgccctcctgctcttggattacaattccatcagaattgcacagttttacaatctgatttca |
23699490 |
T |
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| Q |
119 |
tttctttcttgaggttgctaccacaaaggaaaaatttatatttgggtcaacatctcatagctaatgcgccttttctctctgcttcctcttgcttgagtct |
218 |
Q |
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| T |
23699491 |
tttctttcttgaggttgctaccacaaaggaaaaatttatatttgagtcaacatctcgtagctaatgcgccttttctctctgcttcctcttgcttgagtct |
23699590 |
T |
|
| Q |
219 |
tacacttaattttctacgcgcttcttggtatttctgcatattccacgctcttttgactacgtagtcaagtcccgacttctctaaccaagcatttccaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23699591 |
tacacttaattttctacgcgcttcttggtatttctgcatattccacgctcttttgactacgtagtcaagtcccgacttctctaaccaagcatttccaaat |
23699690 |
T |
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| Q |
319 |
cacaataaacgagatttcatgtttatgatttggtagtacccgcacaccta |
368 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23699691 |
cacaataaacgagatttcatgtttatgatttagtagtacccgcacaccta |
23699740 |
T |
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