View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11407_high_1_N (Length: 590)
Name: NF11407_high_1_N
Description: NF11407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11407_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 172 - 385
Target Start/End: Complemental strand, 10299255 - 10299042
Alignment:
| Q |
172 |
gttgtgggagaagggtggattgaatcctctaatatgtaatttatacatcagagtgcaaagtatgatgtatcatcgttcatgaaaagaaaaaacacatgaa |
271 |
Q |
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| T |
10299255 |
gttgttggagaagggtggaatgaatcctctaatatgtaatttatacatcagagtgcaaagtatgatgtatcatcgttcatgaaaagaaaaaacacatgaa |
10299156 |
T |
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| Q |
272 |
atatttagatnnnnnnnntttaaatggtgatatatcacactttactcactcaacttatatatcaaatacatatgagagaatccatttccagggagaaggg |
371 |
Q |
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| T |
10299155 |
atatttagataaaaaaaatttaaatggtgataaatcacactttactcactcaacttatatatcaaatacatatgagagaatccatttccagggagaaggg |
10299056 |
T |
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| Q |
372 |
aatgatttgcacat |
385 |
Q |
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| T |
10299055 |
aatgatttgcacat |
10299042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 450 - 590
Target Start/End: Complemental strand, 10298982 - 10298842
Alignment:
| Q |
450 |
actcgaccaactaggttacggtggattggtggtccatgttagacgcagtaaaacgtcaaaatctgtttaatgagaagaacaaaaatgtaccatcctgtta |
549 |
Q |
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| T |
10298982 |
actcgaccaactaggttacggtggattggtggtccatgttagacgcagtaaaacgtcaaaatctgtttaatgagaagaacaaaaatgtaccatcttgtta |
10298883 |
T |
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| Q |
550 |
gaaattgttggtggttatgtactatatgtattggcaaaaaa |
590 |
Q |
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| T |
10298882 |
gaaattgttggtggttatgtactatatgtattggcaaaaaa |
10298842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 10299423 - 10299343
Alignment:
| Q |
4 |
catgcttaaagagcaaacgttgaaacaaaacaacaacaataaaaacagggctaaaatatcaactctcaccgcaactcaacg |
84 |
Q |
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| T |
10299423 |
catgcttaaagagcaaacgttgaaacaaaacaacaacaataaaaacagggctaaaatatcaattctcaccgcaactcaacg |
10299343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 434
Target Start/End: Complemental strand, 10299043 - 10299010
Alignment:
| Q |
401 |
atggatgagtttgagtggaaaggagaaagccata |
434 |
Q |
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| T |
10299043 |
atggatgagtttgagtggaaaggagaaagccata |
10299010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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