View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11407_high_2 (Length: 558)
Name: NF11407_high_2
Description: NF11407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11407_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 47117119 - 47116595
Alignment:
| Q |
1 |
accggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgt |
100 |
Q |
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| T |
47117119 |
accggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgt |
47117020 |
T |
|
| Q |
101 |
taaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaa |
200 |
Q |
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| T |
47117019 |
taaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaa |
47116924 |
T |
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| Q |
201 |
ctaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnng |
300 |
Q |
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| T |
47116923 |
ctaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaag |
47116824 |
T |
|
| Q |
301 |
agatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgt-gctgcattggggattcgttcattaacataacatca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
47116823 |
agatatcataaggaaatgaaataacaagggtatgaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatca |
47116724 |
T |
|
| Q |
400 |
ttgaatgagatgtatgacgtggaaattttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttct |
499 |
Q |
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| T |
47116723 |
ttgaatgagatgtatgacgtggaacttttctttgtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttct |
47116624 |
T |
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| Q |
500 |
ctttccttaccagttttccaccaaataat |
528 |
Q |
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| T |
47116623 |
ctttccttaccagttttccaccaaataat |
47116595 |
T |
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