View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11407_high_4 (Length: 510)
Name: NF11407_high_4
Description: NF11407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11407_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 50 - 308
Target Start/End: Complemental strand, 23386505 - 23386246
Alignment:
| Q |
50 |
cccacctttacaaaattagaagtccacttcttttccactaagaaacacaatttagaaaaaa-ggtccacaactatgatatggacagtgatgccaaaatct |
148 |
Q |
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| T |
23386505 |
cccacctttacaaaattagaagtccacttcttttccactaataaacacaatttagaaaaaaaggtccacaactatgatatggacagtgatgctaaaatct |
23386406 |
T |
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| Q |
149 |
ttgttgtttttgggattagtgttttaaaaatcagaccgaaccgattggtgttctattcatttaactgaaaattaattagtttattgattggttttatttt |
248 |
Q |
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| T |
23386405 |
ttgatgtttttgggactaatgttttaaaaatcagaccgaaccgatcggtgttctattcatttaactaaaaattaattagtttaatgattggttttatttt |
23386306 |
T |
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| Q |
249 |
gattgtattttattctcattgaaaaggattgaattgagatatagaatagaatcaagctcg |
308 |
Q |
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| T |
23386305 |
gattgtattttattctcattgggcaggattgaattgagatatagaatagaatcaagctcg |
23386246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 361 - 510
Target Start/End: Complemental strand, 23386193 - 23386044
Alignment:
| Q |
361 |
tccacttcaaacatggttgaatcaattgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaacataa |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23386193 |
tccacttcaaacatggttgaatcaattgaggattgatcaacaagtctcacatgttcaatctttgatatgttatttgaaacataatactatcgaaatataa |
23386094 |
T |
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| Q |
461 |
tccagattaatgttatactgtatttgcatttgaccgcaattttcttcaaa |
510 |
Q |
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| T |
23386093 |
tccagattaatgttatactatatttgcatttgaccgcaattttcttcaaa |
23386044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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