View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11408_high_3 (Length: 409)
Name: NF11408_high_3
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 34 - 391
Target Start/End: Complemental strand, 10218998 - 10218642
Alignment:
| Q |
34 |
atttaaaggcaacgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctattgatatttcaataaaaagaataaaagtg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10218998 |
atttaaaggcaacgatacaatgataactgataataagttttgtaacaagaacaattggcacaaacgatctattgatatttcaataaaaagaataaaagtg |
10218899 |
T |
|
| Q |
134 |
gccggctannnnnnnnnnnnatatggacaataaataccgaaattattaagtcagacgctatgatgaacatttgaacttcgactatttcatttg-gtatgt |
232 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||| ||||||||||| |||| ||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
10218898 |
gccggctattttttt-----atatgaacaataaatgtcgaaattgttaagtcagacattatggtgagcattcgaacttcgactatttcatttgtgtatgt |
10218804 |
T |
|
| Q |
233 |
gagtttttaacagtgttgtcgt---ttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattc |
329 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218803 |
gagtttttaatagcgttgtcgtcgtttcttttatttaccaaacaaaaaaatcatcaacaaaaagtccatataatcacattaaattgtgaatttgtgattc |
10218704 |
T |
|
| Q |
330 |
actttggctccaatgctagctcttaccactagaatttgaacgcatatgcttcttctctgttc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218703 |
actttggctccaatgctagctcttaccactagaatttgaacgcatatgcttcttctctgttc |
10218642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 11050986 - 11050852
Alignment:
| Q |
8 |
catatttatattgatcatcatcatgaatttaaaggcaa-cgatacaatgataactggtaataagttttgtaacaagaacaattggcacaaacggtctatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11050986 |
catatttatattgatcatcatcatgaattaaaagacaaaccatacaatggtaactggtaataagttttgtaacaagaacaattggcacaaagagtctatt |
11050887 |
T |
|
| Q |
107 |
gatatttcaataaaaagaataaaagtggccggcta |
141 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11050886 |
gatgtttcaataaaaagaataaaagtggccggcta |
11050852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 11050729 - 11050630
Alignment:
| Q |
203 |
tttgaacttcgactatttcatttg-gtatgtgagtttttaacagtgttgtcgtttcttttatttaccaaacnnnnnnntcatcaacaaaaagtccatata |
301 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
11050729 |
tttgaattccgactatttcatttgtgtatgtgagtttttaacaactttgt-gtttcttttatctaccaaataaaaatatcatcaataaaaagtccatata |
11050631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University