View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11408_high_4 (Length: 407)

Name: NF11408_high_4
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11408_high_4
NF11408_high_4
[»] chr3 (40 HSPs)
chr3 (8-112)||(2878423-2878527)
chr3 (298-351)||(2878202-2878255)
chr3 (278-343)||(14752159-14752224)
chr3 (278-346)||(26208119-26208187)
chr3 (278-340)||(46711609-46711671)
chr3 (278-340)||(50650988-50651050)
chr3 (278-343)||(6075189-6075254)
chr3 (278-339)||(29235299-29235360)
chr3 (278-343)||(35963260-35963325)
chr3 (279-343)||(36546650-36546714)
chr3 (279-343)||(36561601-36561665)
chr3 (283-346)||(26724947-26725010)
chr3 (278-333)||(47115967-47116022)
chr3 (278-328)||(7866434-7866484)
chr3 (278-340)||(9264662-9264724)
chr3 (278-340)||(23910464-23910526)
chr3 (278-343)||(11054262-11054327)
chr3 (278-343)||(31837027-31837092)
chr3 (278-343)||(37042368-37042433)
chr3 (278-339)||(54464847-54464908)
chr3 (283-343)||(37075068-37075128)
chr3 (278-340)||(30189682-30189744)
chr3 (278-340)||(53270346-53270407)
chr3 (278-343)||(28875514-28875579)
chr3 (278-346)||(10115010-10115078)
chr3 (278-313)||(579096-579131)
chr3 (280-340)||(19464186-19464248)
chr3 (285-340)||(23311551-23311606)
chr3 (278-340)||(41476286-41476349)
chr3 (278-321)||(41935865-41935908)
chr3 (278-328)||(50730232-50730282)
chr3 (278-328)||(50782572-50782622)
chr3 (278-327)||(8703229-8703278)
chr3 (278-327)||(9055116-9055165)
chr3 (278-339)||(25242129-25242190)
chr3 (285-345)||(32619787-32619848)
chr3 (278-346)||(10014368-10014436)
chr3 (278-346)||(10252110-10252178)
chr3 (282-346)||(22479009-22479073)
chr3 (285-333)||(46303689-46303737)
[»] chr2 (26 HSPs)
chr2 (278-343)||(19264204-19264269)
chr2 (278-343)||(3201430-3201495)
chr2 (278-343)||(35517227-35517292)
chr2 (281-343)||(28599142-28599204)
chr2 (279-333)||(35023012-35023066)
chr2 (278-347)||(7645218-7645287)
chr2 (278-346)||(9864709-9864778)
chr2 (278-346)||(12938343-12938411)
chr2 (278-346)||(11825350-11825414)
chr2 (285-346)||(5963301-5963362)
chr2 (278-343)||(6110190-6110255)
chr2 (278-346)||(24204520-24204588)
chr2 (278-346)||(25572146-25572214)
chr2 (278-346)||(29524032-29524100)
chr2 (278-346)||(40808711-40808779)
chr2 (278-333)||(35115794-35115849)
chr2 (283-333)||(23987020-23987070)
chr2 (278-340)||(45085364-45085426)
chr2 (278-339)||(43415509-43415570)
chr2 (278-321)||(28858438-28858481)
chr2 (279-346)||(32010203-32010270)
chr2 (280-339)||(33198624-33198683)
chr2 (278-340)||(11617131-11617193)
chr2 (278-347)||(6765924-6765993)
chr2 (278-346)||(8701703-8701771)
chr2 (278-346)||(28492617-28492685)
[»] chr8 (18 HSPs)
chr8 (280-343)||(24892943-24893006)
chr8 (278-343)||(34890167-34890232)
chr8 (278-346)||(29920261-29920329)
chr8 (277-331)||(11158675-11158729)
chr8 (278-340)||(13143938-13144000)
chr8 (278-340)||(36190877-36190939)
chr8 (278-340)||(43216340-43216402)
chr8 (278-340)||(26483637-26483699)
chr8 (278-346)||(2052962-2053030)
chr8 (278-346)||(8709779-8709847)
chr8 (278-333)||(7858640-7858695)
chr8 (278-340)||(7022396-7022458)
chr8 (278-340)||(7499820-7499882)
chr8 (278-339)||(30575827-30575888)
chr8 (278-347)||(44663785-44663851)
chr8 (289-346)||(15824641-15824698)
chr8 (280-333)||(34900037-34900090)
chr8 (278-330)||(33563500-33563552)
[»] chr5 (19 HSPs)
chr5 (278-343)||(20644118-20644183)
chr5 (279-340)||(20039209-20039270)
chr5 (278-343)||(42273751-42273816)
chr5 (278-343)||(6686489-6686554)
chr5 (278-339)||(43589954-43590015)
chr5 (278-333)||(37562753-37562808)
chr5 (280-340)||(34425437-34425497)
chr5 (278-340)||(11261876-11261938)
chr5 (278-343)||(9957427-9957491)
chr5 (278-339)||(12792778-12792839)
chr5 (278-347)||(30703701-30703770)
chr5 (278-346)||(25840965-25841033)
chr5 (283-346)||(12912292-12912354)
chr5 (291-346)||(41625517-41625571)
chr5 (281-340)||(43454318-43454377)
chr5 (304-346)||(5984126-5984168)
chr5 (289-343)||(37522592-37522646)
chr5 (278-339)||(12729877-12729937)
chr5 (277-321)||(38130105-38130148)
[»] scaffold0045 (1 HSPs)
scaffold0045 (278-340)||(78064-78126)
[»] chr7 (18 HSPs)
chr7 (278-340)||(18102637-18102699)
chr7 (278-340)||(46760248-46760310)
chr7 (278-339)||(6191153-6191214)
chr7 (278-343)||(19912760-19912825)
chr7 (278-343)||(45486059-45486124)
chr7 (278-340)||(14805976-14806038)
chr7 (278-340)||(15252970-15253032)
chr7 (281-343)||(25944680-25944742)
chr7 (278-343)||(25737618-25737683)
chr7 (278-343)||(35923356-35923420)
chr7 (278-346)||(16917572-16917640)
chr7 (278-346)||(35887960-35888028)
chr7 (278-346)||(47779705-47779773)
chr7 (278-340)||(12632335-12632397)
chr7 (281-338)||(14574673-14574730)
chr7 (285-330)||(19492391-19492436)
chr7 (279-339)||(37767011-37767071)
chr7 (278-346)||(44682978-44683046)
[»] chr4 (32 HSPs)
chr4 (277-343)||(20281693-20281759)
chr4 (278-340)||(29203611-29203673)
chr4 (278-343)||(2229349-2229414)
chr4 (278-343)||(14332862-14332927)
chr4 (278-343)||(39078258-39078323)
chr4 (278-343)||(47867981-47868046)
chr4 (278-339)||(50080441-50080502)
chr4 (278-343)||(7654719-7654784)
chr4 (278-339)||(28668986-28669047)
chr4 (278-346)||(5064640-5064708)
chr4 (284-340)||(16604837-16604893)
chr4 (278-333)||(12002618-12002673)
chr4 (278-340)||(4058820-4058882)
chr4 (278-340)||(26916430-26916492)
chr4 (278-340)||(41414596-41414658)
chr4 (279-343)||(55580772-55580836)
chr4 (281-340)||(16473853-16473912)
chr4 (281-343)||(56318058-56318120)
chr4 (278-339)||(5483263-5483324)
chr4 (278-343)||(24940467-24940532)
chr4 (278-346)||(8683291-8683359)
chr4 (278-346)||(32410427-32410495)
chr4 (278-313)||(20716312-20716347)
chr4 (280-346)||(42915629-42915695)
chr4 (278-347)||(17794526-17794595)
chr4 (278-339)||(28142607-28142668)
chr4 (305-346)||(31280288-31280329)
chr4 (300-345)||(32280010-32280055)
chr4 (285-346)||(35310734-35310795)
chr4 (278-330)||(10069812-10069864)
chr4 (278-346)||(21722667-21722735)
chr4 (278-330)||(32203328-32203380)
[»] chr6 (12 HSPs)
chr6 (278-343)||(21542522-21542587)
chr6 (278-343)||(34177633-34177698)
chr6 (278-343)||(35129046-35129111)
chr6 (281-343)||(11082240-11082302)
chr6 (278-346)||(7274867-7274935)
chr6 (279-346)||(16655287-16655354)
chr6 (278-339)||(17751736-17751797)
chr6 (279-346)||(5822027-5822094)
chr6 (278-333)||(9428859-9428914)
chr6 (285-343)||(3095719-3095777)
chr6 (278-328)||(12461421-12461471)
chr6 (285-346)||(30794191-30794252)
[»] chr1 (30 HSPs)
chr1 (278-343)||(2126142-2126207)
chr1 (278-343)||(24190573-24190638)
chr1 (278-346)||(52985034-52985102)
chr1 (278-340)||(15959632-15959694)
chr1 (278-340)||(28016738-28016800)
chr1 (278-343)||(6786942-6787007)
chr1 (278-343)||(33369654-33369719)
chr1 (278-343)||(11241131-11241196)
chr1 (278-339)||(13136546-13136607)
chr1 (279-339)||(30221833-30221893)
chr1 (282-343)||(7467958-7468020)
chr1 (278-340)||(32623997-32624059)
chr1 (278-340)||(35691500-35691561)
chr1 (278-340)||(39555578-39555640)
chr1 (278-340)||(43667295-43667357)
chr1 (278-340)||(45226245-45226307)
chr1 (278-339)||(32742194-32742255)
chr1 (278-343)||(32983164-32983229)
chr1 (280-340)||(4672938-4672998)
chr1 (278-346)||(30701377-30701445)
chr1 (279-347)||(36384024-36384092)
chr1 (278-346)||(44148828-44148896)
chr1 (280-339)||(6785564-6785622)
chr1 (278-313)||(24728618-24728653)
chr1 (278-345)||(45840058-45840125)
chr1 (284-326)||(1820536-1820578)
chr1 (278-340)||(40718785-40718847)
chr1 (278-343)||(42965808-42965873)
chr1 (278-347)||(50176622-50176691)
chr1 (278-346)||(3076396-3076464)
[»] scaffold0300 (1 HSPs)
scaffold0300 (277-340)||(564-627)
[»] scaffold0062 (1 HSPs)
scaffold0062 (278-343)||(44763-44828)
[»] scaffold0442 (1 HSPs)
scaffold0442 (278-339)||(10153-10214)
[»] scaffold0009 (1 HSPs)
scaffold0009 (278-346)||(157895-157963)
[»] scaffold0565 (1 HSPs)
scaffold0565 (278-346)||(5867-5935)
[»] scaffold0330 (1 HSPs)
scaffold0330 (278-346)||(3269-3337)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 2878527 - 2878423
Alignment:
Q  8 aatgagatagacatgccagacagaaatttcatattaggaaaaagaatgtaatttaatatgaatttattgcaggttcatttttcatgaataaattaattcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2878527 aatgagatagacatgccagacagaaatttcatattaggaaaaagaatataatttaatatgaatttattgcaggttcattttttatgaataaattaattcg 2878428  T
Q  108 agaca 112  Q
    |||||    
T  2878427 agaca 2878423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 2878255 - 2878202
Alignment:
Q  298 ttaaacataagaatttagaatataattttttgtgttatctttggaataaacccc 351  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  2878255 ttaaacataagaatttagaatatagttttttgtgttatctttggaataagcccc 2878202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 14752159 - 14752224
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||| |||||||| |||||||||||||| || |||||||||||||||| |||||||||    
T  14752159 atcacacttatttagaaaactaaaacataagaatttggagtataattttttgtgttttctttggaa 14752224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 26208187 - 26208119
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| | | ||||||||    
T  26208187 atcacacttattaagaaaactaaaacataagaatttagagtatagttttttgtgttttgtctggaataa 26208119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 46711609 - 46711671
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||  |||||||||||||| || |||||||||||||||| ||||||    
T  46711609 atcacacttattaagaaaacgaaaacataagaatttggagtataattttttgtgttttctttg 46711671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 50650988 - 50651050
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| ||||||||||||||  |||||| ||||||||||| ||||||    
T  50650988 atcacacttattaagaaaactaaaacataagaatttgaaatatagttttttgtgttttctttg 50651050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 6075254 - 6075189
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| ||  |||||||||| || |||||||||||||||| |||||||||    
T  6075254 atcacacttattaagaaaactaaagtataagaatttggagtataattttttgtgttttctttggaa 6075189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 29235360 - 29235299
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || |||||    
T  29235360 atcacacttattaagaaaactaaaacataagaatttagagtatagttttttgtattttcttt 29235299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 35963325 - 35963260
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| | |||||||    
T  35963325 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttgtttggaa 35963260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 36546714 - 36546650
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||||| |||||||| |||||||| |||| |||||||| || |||||||||    
T  36546714 tcacacttattaagaaaactaaaacataaaaatttagagtatagttttttgtattttctttggaa 36546650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 36561601 - 36561665
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||||| |||||||| |||||||| |||| |||||||| || |||||||||    
T  36561601 tcacacttattaagaaaactaaaacataaaaatttagagtatagttttttgtattttctttggaa 36561665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 26724947 - 26725010
Alignment:
Q  283 acttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||||| ||| ||||||||||  | |||||||||||||||| ||||||||||||    
T  26724947 acttattaagaaaactaaaatataagaatttgaagtataattttttgtgttttctttggaataa 26725010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 47116022 - 47115967
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47116022 atcacatttattaaaaaaactaaaacataagaatttagagtataattttttgtgtt 47115967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 7866434 - 7866484
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataatttttt 328  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  7866434 atcacacttattaagaaaactaaaacataagaatttagagtatagtttttt 7866484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 9264724 - 9264662
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| ||||||| |||||| || |||| ||||||||||| ||||||    
T  9264724 atcacacttattaagaaaactaaaacatatgaattttgagtatagttttttgtgttttctttg 9264662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 23910464 - 23910526
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||  |||||||||| ||||||    
T  23910464 atcacacttattaagaaaattaaaacataagaatttagagtatagctttttgtgttttctttg 23910526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 11054262 - 11054327
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||| |||||||||||||||| ||| |||||||||| || |||| ||||||||||| |||||||||    
T  11054262 atcatacttattaagaaaactaaaatataagaatttggagtatagttttttgtgttttctttggaa 11054327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 31837092 - 31837027
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| ||||||||||| || || |||| |||||||| || |||||||||    
T  31837092 atcacacttattaagaaaactaaaacataagaagttggagtatagttttttgtattttctttggaa 31837027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 37042368 - 37042433
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| || |||| ||||||||||| || ||||||    
T  37042368 atcacacttattaagaaaactaaaacataaaaatttggagtatagttttttgtgttttcgttggaa 37042433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 54464847 - 54464908
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||||| |||||||||||||| ||||||||||||||  | |||||||||||||||| |||||    
T  54464847 atcacatttattaagaaaactaaaacataagaatttgaagtataattttttgtgttttcttt 54464908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 37075128 - 37075068
Alignment:
Q  283 acttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||| |||||| ||||||||||||||  | |||||||||||||||| |||||||||    
T  37075128 acttattaaaaaaactaaaacataagaatttgaagtataattttttgtgttttctttggaa 37075068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 30189744 - 30189682
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||| |||| | |||||||||||||| || |||| ||||||||||| ||||||    
T  30189744 atcacacttattaaaaaaattaaaacataagaatttggagtatagttttttgtgttttctttg 30189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 53270407 - 53270346
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||| |||||||||| |||||||||||||||| || |||| ||||||||||| ||||||    
T  53270407 atcacactcattaagaaaa-ttaaacataagaatttggagtatagttttttgtgttttctttg 53270346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 28875579 - 28875514
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| || ||||||||||| || |||| || |||||||| |||||||||    
T  28875579 atcacatttattaagaaaactaaagcataagaatttggactatagttatttgtgttttctttggaa 28875514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 10115078 - 10115010
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||  | |||  || |||||||||||| ||||||||| |||||    
T  10115078 atcacacttattaagaaaactaaaacatagtagtttgtaacataattttttgtattatctttgaaataa 10115010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 579096 - 579131
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaattt 313  Q
    ||||||||||||||||||||| ||||||||||||||    
T  579096 atcacacttattaagaaaactaaaacataagaattt 579131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 19464248 - 19464186
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaattt--agaatataattttttgtgttatctttg 340  Q
    |||||||||||| |||||| ||||||||||||||  || ||||| ||||||||||| ||||||    
T  19464248 cacacttattaacaaaactaaaacataagaatttggagtatatagttttttgtgttttctttg 19464186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 23311551 - 23311606
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||| |||||||| |||||||| |||| |||| |||||| ||||||    
T  23311551 ttattaagaaaactaaaacataaaaatttagagtatagttttgtgtgttttctttg 23311606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 41476286 - 41476349
Alignment:
Q  278 atcacacttattaagaaaact-taaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||||||||||  |||||||| ||||| || |||| ||||||||||| ||||||    
T  41476286 atcacacttattaagaaaactaaaaacataaaaatttggagtatagttttttgtgttttctttg 41476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 41935865 - 41935908
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatata 321  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||    
T  41935865 atcacacttattaacaaaactaaaacaaaagaatttagaatata 41935908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 50730282 - 50730232
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataatttttt 328  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||||    
T  50730282 atcacatttattaagaaaactaaaacataagaatttggagtatagtttttt 50730232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 50782572 - 50782622
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataatttttt 328  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||||    
T  50782572 atcacatttattaagaaaactaaaacataagaatttggagtatagtttttt 50782622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 8703278 - 8703229
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttt 327  Q
    |||||||||||||| |||||| |||||||||||||| || |||| |||||    
T  8703278 atcacacttattaaaaaaactaaaacataagaatttggagtatagttttt 8703229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 9055165 - 9055116
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttt 327  Q
    |||||||||||||| |||||| |||||||||||||| || |||| |||||    
T  9055165 atcacacttattaaaaaaactaaaacataagaatttggagtatagttttt 9055116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 25242129 - 25242190
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| |||||||  | |||  || ||| |||||||||||||||||    
T  25242129 atcacacttattaagaaaactaaaacatagtagtttgtaacatagttttttgtgttatcttt 25242190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 32619787 - 32619848
Alignment:
Q  285 ttattaagaaaact-taaacataagaatttagaatataattttttgtgttatctttggaata 345  Q
    |||||||||||||| | ||||| ||||||| || |||||| ||||||||| |||||||||||    
T  32619787 ttattaagaaaactatgaacatgagaatttggagtataatattttgtgttttctttggaata 32619848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 10014436 - 10014368
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||  | |||  || |||||| ||||| ||||||||| |||||    
T  10014436 atcacacttattaagaaaactaaaacatagtagtttgtaacataattgtttgtattatctttgaaataa 10014368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 10252178 - 10252110
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||  | |||  || |||||| ||||| ||||||||| |||||    
T  10252178 atcacacttattaagaaaactaaaacatagtagtttgtaacataattgtttgtattatctttgaaataa 10252110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 22479009 - 22479073
Alignment:
Q  282 cacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||| |||||||  | |||  || ||| |||||||||||||||||| |||||    
T  22479009 cacttattaagaaaactaaaacatagtagtttgtaacatagttttttgtgttatctttgaaataa 22479073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 46303737 - 46303689
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||||||||||| |||||||  |||||| ||||||||||||| ||||    
T  46303737 ttattaagaaaactaaaacatagtaatttaaaatataattttttatgtt 46303689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 19264269 - 19264204
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  19264269 atcacacttattaagaaaactaaaacataagaatttagagtataattttttgtgttttctttggaa 19264204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 3201495 - 3201430
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| |||||||||    
T  3201495 atcacacttattaagaaaactaaaacataagaatttaaagtatagttttttgtgttttctttggaa 3201430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 35517292 - 35517227
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  35517292 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 35517227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 28599142 - 28599204
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  28599142 acacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 28599204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 35023066 - 35023012
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  35023066 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgtt 35023012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 7645218 - 7645287
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    ||||||||||||||||||||| |||||||||||||| || |||||| ||||||||| || || |||||||    
T  7645218 atcacacttattaagaaaactaaaacataagaatttggagtataatattttgtgttttccttagaataaa 7645287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 9864709 - 9864778
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatata-attttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||||||||| || ||||  ||||||||||| ||||||||||||    
T  9864709 atcacacttattaagaaaactaaaacataagaatttggagtatagtttttttgtgttttctttggaataa 9864778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 12938411 - 12938343
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||| | |||||| |||||    
T  12938411 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgctttctttgaaataa 12938343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 11825350 - 11825414
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    ||||||| ||||||||||||    
T  11825350 atcacacttattaagaaaactaaaacataagaattttgaatataa----ttgtgttttctttggaataa 11825414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 5963362 - 5963301
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||||| ||||| ||||||    
T  5963362 ttattaagaaaactaaaatataagaatttagagtctaattttttgtgttttctttagaataa 5963301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 6110190 - 6110255
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || ||||  |||||||||| |||| ||||    
T  6110190 atcacacttattaagaaaactaaaacataagaatttggagtatagctttttgtgttttcttcggaa 6110255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 24204520 - 24204588
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||| |||| ||||||||| |||| ||||||||| || |||||||| ||||||| ||||||||||||    
T  24204520 atcacatttatcaagaaaactaaaacctaagaatttggagtataatttattgtgttttctttggaataa 24204588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 25572214 - 25572146
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| || |||||||||||  |  ||| ||||||||||| ||||||||||||    
T  25572214 atcacacttattaagaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataa 25572146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 29524032 - 29524100
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||| ||||||| || |||||||||||  |  ||||||||||||||| ||||||||||||    
T  29524032 atcacacttattatgaaaactaaagcataagaatttgtagcataattttttgtgttttctttggaataa 29524100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 40808711 - 40808779
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| || |||||||||||  |  ||| ||||||||||| ||||||||||||    
T  40808711 atcacacttattaagaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataa 40808779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 35115794 - 35115849
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||||||||||||| |||| |||||||||||||| || |||| |||||||||||    
T  35115794 atcacacttattaagagaactaaaacataagaatttggagtatagttttttgtgtt 35115849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 23987020 - 23987070
Alignment:
Q  283 acttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  23987020 acttattaagaaaactaaaacataataatttagaatataactttttatgtt 23987070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 45085426 - 45085364
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| | |||||||||||||| || |||| |||||||| || ||||||    
T  45085426 atcacacttattaagaaaattaaaacataagaatttggagtatagttttttgtattttctttg 45085364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 43415570 - 43415509
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||||||||| |||||||||| ||| ||||||||||  | |||||||||||||||| |||||    
T  43415570 atcacacttactaagaaaactaaaatataagaatttgaagtataattttttgtgttttcttt 43415509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 28858481 - 28858438
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatata 321  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||    
T  28858481 atcacacatattaagaaaactaaaacataagaatttaaaatata 28858438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 32010270 - 32010203
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||||||||| | |||||  | |||  |||||| |||||||||||||||||| |||||    
T  32010270 tcacacttattaagaaaactaatacatagtagtttgtaatatagttttttgtgttatctttgaaataa 32010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 33198624 - 33198683
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||| ||| |||||||||| || | || ||||||||||| |||||    
T  33198624 cacacttattaagaaaactaaaatataagaatttggactctagttttttgtgttttcttt 33198683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 11617193 - 11617131
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| | |||||||||||||| || |||| ||||| || || ||||||    
T  11617193 atcacacttattaagaaaattaaaacataagaatttggagtatagtttttggtattttctttg 11617131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 6765924 - 6765993
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    ||||||||||||||||||| | |||||||| |||||  | |||| |||||| |||| || ||||||||||    
T  6765924 atcacacttattaagaaaattaaaacataaaaatttgaagtatagttttttatgttttcattggaataaa 6765993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 8701771 - 8701703
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||| ||||||||||||||| |||||||| |||||  |  ||| |||||| |||| ||||||||||||    
T  8701771 atcacgcttattaagaaaactaaaacataaaaatttgtagcatagttttttatgttttctttggaataa 8701703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 28492685 - 28492617
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| | || |||  ||||   ||||||||||||||||| || |||||||||    
T  28492685 atcacacttattaagaaaactaacacttaatgatttgagatataattttttgtgttctccttggaataa 28492617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 24893006 - 24892943
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  24893006 cacacttattaagaaaacttaaacataagaatttagagtatagttttttgtgttttctttggaa 24892943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 34890167 - 34890232
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||    
T  34890167 atcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttggaa 34890232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 29920261 - 29920329
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| ||||||||||||||  | || ||||||||||||||||||||||||||    
T  29920261 atcacacttattaagaaaactaaaacataagaatttgaagtacaattttttgtgttatctttggaataa 29920329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 11158729 - 11158675
Alignment:
Q  277 tatcacacttattaagaaaacttaaacataagaatttagaatataattttttgtg 331  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  11158729 tatcaaacttattaagaaaactaaaacataagaatttggaatataattttttgtg 11158675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 13143938 - 13144000
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||    
T  13143938 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttg 13144000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 36190939 - 36190877
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  36190939 atcacacttgttaagaaaactaaaacataagaatttagagtatagttttttgtgttttctttg 36190877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 43216340 - 43216402
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||    
T  43216340 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttg 43216402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 26483699 - 26483637
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| ||||||||||||||  | |||| ||||||||||| ||||||    
T  26483699 atcacacttattaagaaaactaaaacataagaatttgaagtatagttttttgtgttttctttg 26483637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 2053030 - 2052962
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaa-tataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||| ||||| ||||||    
T  2053030 atcacacttattaagaaaactaaaacataataatt-agaagtataattttttgtgttttctttagaataa 2052962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 8709779 - 8709847
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||| ||| |||||| |||||||||||||| || |||| ||||||||||| |||||| |||||    
T  8709779 atcacacttaataaaaaaactaaaacataagaatttggagtatagttttttgtgttttctttgaaataa 8709847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 7858695 - 7858640
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||| |||||||||||||| |||||||||||||| || |||| |||||||||||    
T  7858695 atcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtgtt 7858640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 7022396 - 7022458
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||||| |||||||| ||||| || |||| ||||||||||| ||||||    
T  7022396 atcacatttattaagaaaactaaaacataaaaatttggagtatagttttttgtgttttctttg 7022458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 7499882 - 7499820
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||||| ||||||| ||||||||| ||||| |||||| ||| ||||||    
T  7499882 atcacatttattaagaaaactaaaacataggaatttagagtataactttttgcgttttctttg 7499820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 30575827 - 30575888
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| |||||||| ||||| || || | ||||||||||| |||||    
T  30575827 atcacacttattaagaaaactaaaacataaaaatttggagtaaagttttttgtgttttcttt 30575888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 44663785 - 44663851
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    ||||||||||||||||||||| ||  ||||||||||||| ||||    |||||||| |||||||||||||    
T  44663785 atcacacttattaagaaaactaaattataagaatttagagtata---gtttgtgttttctttggaataaa 44663851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 15824641 - 15824698
Alignment:
Q  289 taagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||| ||||||||||||||  | |||| ||||||||||| ||||| ||||||    
T  15824641 taagaaaactaaaacataagaatttgaagtatagttttttgtgttttctttagaataa 15824698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 34900090 - 34900037
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    ||||||||||||||||||| |||||||| |||||   ||||| |||||||||||    
T  34900090 cacacttattaagaaaactaaaacataataatttgcgatatatttttttgtgtt 34900037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 33563500 - 33563552
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgt 330  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| | |||||||    
T  33563500 atcacatttattaagaaaattaaaacataagaatttaaaatattactttttgt 33563552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 20644183 - 20644118
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||    
T  20644183 atcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttggaa 20644118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 20039270 - 20039209
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  20039270 tcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttg 20039209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 42273816 - 42273751
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  42273816 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 42273751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 6686554 - 6686489
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  6686554 atcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 6686489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 43589954 - 43590015
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||    
T  43589954 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttcttt 43590015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 37562753 - 37562808
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    ||||||||||||||||||||| |||||||||||||| || |||| |||||||||||    
T  37562753 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgtt 37562808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 34425497 - 34425437
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| ||||||||||||||  | |||| ||||||||||| ||||||    
T  34425497 cacacttattaagaaaactaaaacataagaatttgaagtatagttttttgtgttttctttg 34425437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 11261876 - 11261938
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||| ||||| | |||| ||||||| || |||||||||||||||| ||||||    
T  11261876 atcacacttattaagtaaactaacacatgagaatttggagtataattttttgtgttttctttg 11261938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 9957427 - 9957491
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||| ||||||| || ||| | |||||||||| |||||||||    
T  9957427 atcacacttattaagaaaactaaaacatgagaatttggagtat-agtttttgtgttttctttggaa 9957491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 12792778 - 12792839
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||||||||||||| |||||| ||||||||||| || || |||| ||||||||||| |||||    
T  12792778 atcacacttattaaaaaaactaaaacataagaaattggagtatagttttttgtgttttcttt 12792839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 30703770 - 30703701
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    |||| ||||||||| |||||| |||||||  | |||| || |||||||||||||||||||||| ||||||    
T  30703770 atcatacttattaacaaaactaaaacatagtagtttacaacataattttttgtgttatctttgaaataaa 30703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 25841033 - 25840965
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| || ||||| |||||  |  ||| ||||||||||| ||||||||||||    
T  25841033 atcacacttattaagaaaactaaagcataaaaatttgtagcatagttttttgtgttttctttggaataa 25840965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 12912292 - 12912354
Alignment:
Q  283 acttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||||| ||||||| | | || ||||||| |||||||||||||||||| |||||    
T  12912292 acttattaagaaaactaaaacata-gtagttggaatatagttttttgtgttatctttgaaataa 12912354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 41625517 - 41625571
Alignment:
Q  291 agaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||| ||||||||||||||| |||||| ||||||||||| |||||| |||||    
T  41625517 agaaaactaaaacataagaattta-aatatagttttttgtgttttctttgaaataa 41625571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 43454318 - 43454377
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||||| | ||||||||||| ||  |||||| ||||||||||| ||||||    
T  43454318 acacttattaagaaaattaaaacataagaacttgaaatatagttttttgtgttttctttg 43454377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 5984126 - 5984168
Alignment:
Q  304 ataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  5984126 ataagaatttagagtatagttttttgtgttttctttggaataa 5984168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 37522592 - 37522646
Alignment:
Q  289 taagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||| |||||||||||||| || |||| ||||||||||| | |||||||    
T  37522592 taagaaaactaaaacataagaatttggagtatagttttttgtgttttttttggaa 37522646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 12729877 - 12729937
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||||||||||||| |||||| ||||||||||| || || |||| ||||||||||| |||||    
T  12729877 atcacacttattaa-aaaactaaaacataagaaattggagtatagttttttgtgttttcttt 12729937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 38130105 - 38130148
Alignment:
Q  277 tatcacacttattaagaaaacttaaacataagaatttagaatata 321  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||    
T  38130105 tatcacact-attaagaaaactaaaacataagaatttggaatata 38130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 78126 - 78064
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  78126 atcacacttattaagaaaactaaaacataagaatttagagtatagttttttgtgttttctttg 78064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 18102699 - 18102637
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  18102699 atcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttg 18102637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 46760248 - 46760310
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||    
T  46760248 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttg 46760310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 6191214 - 6191153
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||    
T  6191214 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttcttt 6191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 19912760 - 19912825
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  19912760 atcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 19912825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 45486124 - 45486059
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| || |||| ||||||||||| |||||||||    
T  45486124 atcacacttattaagaaaactaaaacataaaaatttggagtatagttttttgtgttttctttggaa 45486059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 14806038 - 14805976
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||| |||||||| || ||||||    
T  14806038 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtattttctttg 14805976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 15253032 - 15252970
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||| |||||||| || ||||||    
T  15253032 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtattttctttg 15252970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 25944742 - 25944680
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||| ||| |||||||||| || ||||| |||||||||| |||||||||    
T  25944742 acacttattaagaaaactaaaatataagaatttggagtataagtttttgtgttttctttggaa 25944680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 25737618 - 25737683
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| |  |||| |||| |||||| |||||||||    
T  25737618 atcacacttattaagaaaactaaaacataaaaatttggggtatagttttgtgtgttttctttggaa 25737683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 35923420 - 35923356
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| || ||| | |||||||||| |||||||||    
T  35923420 atcacacttattaagaaaactaaaacataaaaatttggagtat-agtttttgtgttttctttggaa 35923356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 16917640 - 16917572
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||| | |||||||| |||||  |||||||  |||||| || ||||||||||||    
T  16917640 atcacacttattaagaaaattaaaacataaaaatttgaaatataacattttgttttttctttggaataa 16917572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 35887960 - 35888028
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| |||||| |||||||  | |||  || |||||||||||||||||||||| |||||    
T  35887960 atcacacttattaaaaaaactaaaacatagtagtttgtaacataattttttgtgttatctttgaaataa 35888028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 47779773 - 47779705
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| || |||||||||||  |  ||| ||||||||||| ||||| ||||||    
T  47779773 atcacacttattaagaaaactaaagcataagaatttgtagcatagttttttgtgttttctttagaataa 47779705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 12632335 - 12632397
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||| | |||||||||||||| || |||| |||||| |||| ||||||    
T  12632335 atcacatttattaagaaaattaaaacataagaatttggagtatagttttttatgttttctttg 12632397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 14574730 - 14574673
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctt 338  Q
    |||||||||||||||||  ||| |||||||||| || |||| ||||||||||| ||||    
T  14574730 acacttattaagaaaaccaaaatataagaatttggagtatagttttttgtgttttctt 14574673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 19492391 - 19492436
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgt 330  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||    
T  19492391 ttattaagaaaactaaaacataaaaatttagagtataactttttgt 19492436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 37767011 - 37767071
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||| |||||||||||||| |||||| | ||||| || |||| ||||||||||| |||||    
T  37767011 tcacatttattaagaaaactaaaacatgataatttggagtatagttttttgtgttttcttt 37767071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 44683046 - 44682978
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||| | ||||||||||||  || |||||||||| || |||||| ||||||||| | ||||||||||    
T  44683046 atcacattcattaagaaaactagaaaataagaatttggagtataatattttgtgttttttttggaataa 44682978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 20281759 - 20281693
Alignment:
Q  277 tatcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  20281759 tatcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 20281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 29203673 - 29203611
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  29203673 atcacacttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttg 29203611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 2229414 - 2229349
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  2229414 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 2229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 14332927 - 14332862
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||| |||||||||    
T  14332927 atcacacttattaagaaaactaaaacataagaatttggaatatggttttttgtgttttctttggaa 14332862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 39078323 - 39078258
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  39078323 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 39078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 47868046 - 47867981
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  47868046 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 47867981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 50080441 - 50080502
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||    
T  50080441 atcacacttattaagaaaactaaaacataagaattttgagtataattttttgtgttttcttt 50080502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 7654784 - 7654719
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| || |||| ||||||||||| |||||||||    
T  7654784 atcacacttattaagaaaactaaaacataaaaatttggagtatagttttttgtgttttctttggaa 7654719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 28668986 - 28669047
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||| |||||    
T  28668986 atcacacttattaagaaaactaaaacataagaatttaaagtatagttttttgtgttttcttt 28669047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 5064640 - 5064708
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| |||||||  |||||  || |||||||||||||||||||||| |||||    
T  5064640 atcacacttattaagaaaactaaaacatagtaatttgtaacataattttttgtgttatctttgaaataa 5064708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 16604837 - 16604893
Alignment:
Q  284 cttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  16604837 cttattaagaaaactaaaacataagaatttagagtatagttttttgtgttttctttg 16604893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 12002618 - 12002673
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    ||||||||||||||||||||| |||||||||||||| || |||| |||||||||||    
T  12002618 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgtt 12002673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 4058882 - 4058820
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||    
T  4058882 atcacatttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttg 4058820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 26916492 - 26916430
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||||| || |||  ||||||||||| ||||||    
T  26916492 atcacacttattaagaaaactaaaacataagaatttggagtatggttttttgtgttttctttg 26916430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 41414596 - 41414658
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||||||| | || |||| ||||||||||| ||||||    
T  41414596 atcacacttattaagaaaactaaaacataagaatatggagtatagttttttgtgttttctttg 41414658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 55580836 - 55580772
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||| |||||||||||||| |||||||||||||| || |||| |||||| |||| |||||||||    
T  55580836 tcacatttattaagaaaactgaaacataagaatttggagtatagttttttttgttttctttggaa 55580772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 16473912 - 16473853
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||||||| ||| |||||||||| || |||| ||||||||||| ||||||    
T  16473912 acacttattaagaaaactaaaatataagaatttggagtatagttttttgtgttttctttg 16473853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 56318058 - 56318120
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||| |||| | ||||||||||||||||| |||  ||||||||||| |||||||||    
T  56318058 acacttattaaaaaaattaaaacataagaatttagagtatggttttttgtgttttctttggaa 56318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 5483263 - 5483324
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||| ||||||||||| |||||||| |||||  | |||||||||||||||| |||||    
T  5483263 atcacacttgttaagaaaactaaaacataaaaatttgaagtataattttttgtgttttcttt 5483324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 24940532 - 24940467
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| |||| ||||||||| || |||| |||||||| || |||||||||    
T  24940532 atcacatttattaagaaaactaaaacgtaagaatttggagtatagttttttgtattttctttggaa 24940467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 8683291 - 8683359
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| |||||| || |||||||||||  |  ||| ||||||||||| ||||||||||||    
T  8683291 atcacacttattaaaaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataa 8683359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 32410495 - 32410427
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||||||||||  ||||||  | |||| |||| | |||||||||||||||||| |||||    
T  32410495 atcacacttattaagaaaactacaacatagtagtttataataaagttttttgtgttatctttgaaataa 32410427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 20716347 - 20716312
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaattt 313  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20716347 atcacacttattaagaaaactaaaacataagaattt 20716312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 42915695 - 42915629
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||| |||||| ||| ||||||||||  |  ||| ||||||||||| ||||||||||||    
T  42915695 cacacttattaaaaaaactaaaatataagaatttgtagcatagttttttgtgttttctttggaataa 42915629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 17794526 - 17794595
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    ||||||||||||||||||||| ||| | ||||||||  | |||| ||||||| ||| |||||| ||||||    
T  17794526 atcacacttattaagaaaactaaaaaaaaagaatttgaagtatagttttttgcgttttctttgaaataaa 17794595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 28142607 - 28142668
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||||| ||| || | | |||  || |||||||||||||||||||||    
T  28142607 atcacacttattaagaaaactaaaatatgatagtttgtaacataattttttgtgttatcttt 28142668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 31280329 - 31280288
Alignment:
Q  305 taagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||| |||| ||||||||||| ||||||||||||    
T  31280329 taagaatttagagtatagttttttgtgttttctttggaataa 31280288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 32280010 - 32280055
Alignment:
Q  300 aaacataagaatttagaatataattttttgtgttatctttggaata 345  Q
    |||||||||||||| || |||||||||||||||| ||||| |||||    
T  32280010 aaacataagaatttggagtataattttttgtgttttctttagaata 32280055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 35310734 - 35310795
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| ||||||||||||||  |  ||| ||||||||||| ||||| ||||||    
T  35310734 ttattaagaaaactaaaacataagaatttgtagcatagttttttgtgttttctttagaataa 35310795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 10069864 - 10069812
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgt 330  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| ||||||||    
T  10069864 atcacacttattaataaaactaaaacataagaatttgtagtatagttttttgt 10069812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 21722667 - 21722735
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||| |||| |||||| |||||    
T  21722667 atcacacttattaataaaactaaaacataagaattttaagtatagtgttttatgttttctttgtaataa 21722735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 32203380 - 32203328
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgt 330  Q
    |||||||| ||||| |||||| ||||||||||||||| | |||| ||||||||    
T  32203380 atcacactaattaaaaaaactaaaacataagaatttaaagtatagttttttgt 32203328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 21542587 - 21542522
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  21542587 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 21542522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 34177633 - 34177698
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| |||||||||    
T  34177633 atcacacttattaagaaaattaaaacataagaatttggaatatagttttttgtgttttctttggaa 34177698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 35129046 - 35129111
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  35129046 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 35129111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 11082240 - 11082302
Alignment:
Q  281 acacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  11082240 acacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 11082302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 7274867 - 7274935
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| ||||||||||||||  |  ||| |||||||| || ||||||||||||    
T  7274867 atcacacttattaagaaaactaaaacataagaatttgtagcatagttttttgtattttctttggaataa 7274935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 16655354 - 16655287
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||| ||||||||||||||  | |||| |||||| ||| ||||||||||||| ||||||    
T  16655354 tcacacttattaaaaaaacttaaacatagtagtttataatatagtttattgtgttatctttagaataa 16655287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 17751736 - 17751797
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||| | ||| |||||||||| || |||| ||||||||||| |||||    
T  17751736 atcacacttattaagaaaattaaaatataagaatttggagtatagttttttgtgttttcttt 17751797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 5822027 - 5822094
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||||||||| ||| || | | |||  | |||||||| ||||||||||||||||||||    
T  5822027 tcacacttattaagaaaactaaaatattatagtttgtagtataatttcttgtgttatctttggaataa 5822094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 9428914 - 9428859
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgtt 333  Q
    |||||| ||||||| |||||| ||||||||||||||  | ||||||||||||||||    
T  9428914 atcacatttattaataaaactaaaacataagaatttgaagtataattttttgtgtt 9428859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 3095719 - 3095777
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||| || ||||| ||||| || |||| ||||||||||| |||||||||    
T  3095719 ttattaagaaaactaaagcataaaaatttggagtatagttttttgtgttttctttggaa 3095777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 12461421 - 12461471
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataatttttt 328  Q
    |||||| |||||||||||||| |||||| ||||||| ||||||| ||||||    
T  12461421 atcacatttattaagaaaactaaaacatgagaatttggaatatagtttttt 12461471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 30794191 - 30794252
Alignment:
Q  285 ttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| ||| ||||||||||  | ||||||||||| |||| | ||||||||||    
T  30794191 ttattaagaaaactaaaatataagaatttgaagtataattttttatgttttatttggaataa 30794252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 2126207 - 2126142
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||    
T  2126207 atcacatttattaagaaaactaaaacataagaatttggaatatagttttttgtgttttctttggaa 2126142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 24190638 - 24190573
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||||    
T  24190638 atcacacttattaagaaaactaaaacataagaatttggagtatagttttttgtgttttctttggaa 24190573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 52985102 - 52985034
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||||| | |||||||||||| || |||| ||||||||||| ||||||||||||    
T  52985102 atcacacttattaagaaaactaatacataagaatttggagtatagttttttgtgttttctttggaataa 52985034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 15959632 - 15959694
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  15959632 atcacatttattaagaaaactaaaacataagaatttggagtataattttttgtgttttctttg 15959694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 28016738 - 28016800
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||    
T  28016738 atcacacttattaagaaaactaaaacataagaatttagagtatagtttttggtgttttctttg 28016800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 6787007 - 6786942
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||| ||||||| || |||| ||||||||||| |||||||||    
T  6787007 atcacacttattaagaaaactaaaacatgagaatttggagtatagttttttgtgttttctttggaa 6786942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 33369719 - 33369654
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||| || |||| ||||||||||| |||||||||    
T  33369719 atcacacttattaagaaaactaaaacataaaaatttggagtatagttttttgtgttttctttggaa 33369654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 11241196 - 11241131
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||||||||||| |||| | |||||||||||||| || |||| ||||||||||| |||||||||    
T  11241196 atcacacttattaaaaaaattaaaacataagaatttggagtatagttttttgtgttttctttggaa 11241131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 13136546 - 13136607
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||| | |||||||||||||| || |||| ||||||||||| |||||    
T  13136546 atcacacttattaagaaaattaaaacataagaatttggagtatagttttttgtgttttcttt 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 30221893 - 30221833
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||| |||||||||| | ||||||||||| || ||||||||||||||||||| |||||    
T  30221893 tcacactaattaagaaaattaaaacataagaacttggaatataattttttgtgttttcttt 30221833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 7467958 - 7468020
Alignment:
Q  282 cacttattaagaaaacttaaacataagaatttagaat-ataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||| ||||||||||||||  | | ||||||||||||||| |||||||||    
T  7467958 cacttattaagaaaactaaaacataagaatttgaagtaataattttttgtgttttctttggaa 7468020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 32623997 - 32624059
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||||| |||||||||||||| || | || ||||||||||| ||||||    
T  32623997 atcacaattattaagaaaactaaaacataagaatttggagtgtagttttttgtgttttctttg 32624059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 35691561 - 35691500
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| ||||||||||| || |||||||||||||| || |||||||||||||||| ||||||    
T  35691561 atcacatttattaagaaa-ctaaaacataagaatttggagtataattttttgtgttttctttg 35691500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 39555578 - 39555640
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| | |||||||||||||| || ||||  |||||||||| ||||||    
T  39555578 atcacacttattaagaaaattaaaacataagaatttggagtataggtttttgtgttttctttg 39555640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 43667295 - 43667357
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||| |||||||||||| | | ||||||||||||| | |||||||||||||||| ||||||    
T  43667295 atcacatttattaagaaaattaagacataagaatttaaagtataattttttgtgttttctttg 43667357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 45226307 - 45226245
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||||| |||||||| |||||||| |||| |||| ||| || ||||||    
T  45226307 atcacacttattaagaaaactaaaacataataatttagagtatagttttatgtattttctttg 45226245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 32742194 - 32742255
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||||||||||||| |||||| || ||||||||||| || |||| ||||||||||| |||||    
T  32742194 atcacacttattaaaaaaactaaagcataagaattttgagtatagttttttgtgttttcttt 32742255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 32983164 - 32983229
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    ||||||||||||||||||||| |||||||| ||||   | |||| ||||||||||| |||||||||    
T  32983164 atcacacttattaagaaaactaaaacataaaaattggaagtatagttttttgtgttttctttggaa 32983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 4672998 - 4672938
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||||||||| ||| |||||||||| || |||| |||||||| || ||||||    
T  4672998 cacacttattaagaaaactaaaatataagaatttggagtatagttttttgtattttctttg 4672938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 30701377 - 30701445
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||||||||||||| |||||| |||||||  | |||  || |||||||||||||||||||||| |||||    
T  30701377 atcacacttattaaaaaaactaaaacatagtagtttgtaacataattttttgtgttatctttgaaataa 30701445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 36384092 - 36384024
Alignment:
Q  279 tcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    |||||||||||||||||  | |||||| | |||||   ||||||||||||||||||| |||||||||||    
T  36384092 tcacacttattaagaaagttaaaacattataatttgagatataattttttgtgttatttttggaataaa 36384024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 44148828 - 44148896
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||| ||||||| || |||||||||||  |  ||| ||||||||||| ||||||||||||    
T  44148828 atcacacttattacgaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataa 44148896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 6785622 - 6785564
Alignment:
Q  280 cacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    ||||||||||||||||||| ||||||||||| || || |||| ||||||||||| |||||    
T  6785622 cacacttattaagaaaactaaaacataagaa-ttggagtatagttttttgtgttttcttt 6785564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 24728618 - 24728653
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaattt 313  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24728618 atcacacttattaagaaaactaaaacataagaattt 24728653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 45840058 - 45840125
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaata 345  Q
    ||||||||||||||||||||| |||||||| | |||  || ||| ||||||||||||| |||| ||||    
T  45840058 atcacacttattaagaaaactaaaacataatagtttgtaacatagttttttgtgttatttttgaaata 45840125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 1820578 - 1820536
Alignment:
Q  284 cttattaagaaaacttaaacataagaatttagaatataatttt 326  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||    
T  1820578 cttattaagaaaactaaaacataagaatttggaatatagtttt 1820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 40718847 - 40718785
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    ||||||||||||| ||||||| ||| |||| ||||| || |||| ||||||||||| ||||||    
T  40718847 atcacacttattacgaaaactaaaatataaaaatttggagtatagttttttgtgttttctttg 40718785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 42965808 - 42965873
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||| |||||||||||||||| |||||||| |||||  | | || ||||||||||| |||||||||    
T  42965808 atcatacttattaagaaaactaaaacataaaaatttgaagtttagttttttgtgttttctttggaa 42965873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 50176691 - 50176622
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataaa 347  Q
    |||||| |||||||||||||| |||||||  | |||  || ||| |||||||||||||||||| ||||||    
T  50176691 atcacatttattaagaaaactaaaacatagtagtttgtaacatagttttttgtgttatctttgaaataaa 50176622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 3076464 - 3076396
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||| | || |||||||||||  |  ||| ||||||||||| | ||||||||||    
T  3076464 atcacacttattaagaaaattaaagcataagaatttgtagcatagttttttgtgttttatttggaataa 3076396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 564 - 627
Alignment:
Q  277 tatcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttg 340  Q
    |||||||||||||||||||||| |||||||||||||| || |||| |||| |||||| ||||||    
T  564 tatcacacttattaagaaaactaaaacataagaatttggagtatagttttatgtgttttctttg 627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 44763 - 44828
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaa 343  Q
    |||||| |||||||||||||| |||||||| ||||| || |||| ||||||||||| |||||||||    
T  44763 atcacatttattaagaaaactaaaacataataatttggagtatatttttttgtgttttctttggaa 44828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 10214 - 10153
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatcttt 339  Q
    |||| |||||||||||||| | |||||||||||||| |||| || ||||||||||| |||||    
T  10214 atcatacttattaagaaaattaaaacataagaatttggaatgtagttttttgtgttttcttt 10153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 157963 - 157895
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    |||| |||||||||||||||| || |||||||||||  |  ||| ||||||||||| ||||||||||||    
T  157963 atcatacttattaagaaaactaaagcataagaatttgtagcatagttttttgtgttttctttggaataa 157895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 5867 - 5935
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||| | |||||||  | |||  |||||| |||||||||||||| ||| |||||    
T  5867 atcacacttattaagaaaattaaaacatagtagtttgtaatatagttttttgtgttatcattgaaataa 5935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 3337 - 3269
Alignment:
Q  278 atcacacttattaagaaaacttaaacataagaatttagaatataattttttgtgttatctttggaataa 346  Q
    ||||||||||||||||||| | |||||||  | |||  || ||| |||||||||||||||||| |||||    
T  3337 atcacacttattaagaaaattaaaacatagtagtttgtaacatagttttttgtgttatctttgaaataa 3269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University