View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11408_high_5 (Length: 373)
Name: NF11408_high_5
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 35929428 - 35929089
Alignment:
| Q |
19 |
gatcattgcctggtcaatactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgta |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929428 |
gatcattgcctggtcaatactaatgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgta |
35929329 |
T |
|
| Q |
119 |
tctataaatagatagaaactaagatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagtttttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929328 |
tctataaatagatagaaactaagatatatggaaaccaagttgagaataagatgaagaaggtttctctttatgcttgtttactactcagcgtgagtttttt |
35929229 |
T |
|
| Q |
219 |
ggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929228 |
ggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaa |
35929129 |
T |
|
| Q |
319 |
gaggaagatgcatctaaaacagattcttctgctccctatg |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
35929128 |
gaggaagatgcatctaaaacagattcttctgctccttatg |
35929089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 107 - 347
Target Start/End: Complemental strand, 35912013 - 35911772
Alignment:
| Q |
107 |
cactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactca |
205 |
Q |
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||||||||| |||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
35912013 |
cactgtttttcatctataaatagttagaaacttatgatatattgaagccaagttgagaacaagatgaagaaggtttctctttatgcttgtttactactca |
35911914 |
T |
|
| Q |
206 |
gcgtgagttttttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagac |
305 |
Q |
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| ||||| | |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35911913 |
acttgagtctattggttatttttccatattgcaaagctagtcaagctgataaacttgttgagtttattctgtctagaacctcacagaatcctcctaagac |
35911814 |
T |
|
| Q |
306 |
tctttcttgggaagaggaagatgcatctaaaacagattcttc |
347 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
35911813 |
tctttcatgggaagaggaagatgcattgaaaacacattcttc |
35911772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 51 - 346
Target Start/End: Complemental strand, 35916462 - 35916160
Alignment:
| Q |
51 |
tctcttgtttctttcacatgcctccaaccacaacaa---aacaagccctaaaatactttcactgttttgtatctataaatagatagaaactaa-gatata |
146 |
Q |
| |
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|||||||||||||||||||| ||||||| | ||||| || ||| ||| || | | ||| |||||| |||||||||||| |||||||| | |||||| |
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| T |
35916462 |
tctcttgtttctttcacatggctccaacaagaacaaccaaataagtccttcaaaattgtcaatgtttttcatctataaatagttagaaacttatgatata |
35916363 |
T |
|
| Q |
147 |
tggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtga---gttttttggttatttttccatatagcaaagct |
243 |
Q |
| |
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| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
35916362 |
ttgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtttattactcaatttgatcagtcttttggttatttttccatatagcaaagct |
35916263 |
T |
|
| Q |
244 |
agtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagatt |
343 |
Q |
| |
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|||||| |||||||||| ||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||||| |||||||| |||||| ||| |
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| T |
35916262 |
agtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacatt |
35916163 |
T |
|
| Q |
344 |
ctt |
346 |
Q |
| |
|
||| |
|
|
| T |
35916162 |
ctt |
35916160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 143 - 331
Target Start/End: Complemental strand, 35941497 - 35941309
Alignment:
| Q |
143 |
tatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagc |
242 |
Q |
| |
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||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
35941497 |
tatatagaaatcaagttgagaacaagatggagaaggtttctctttatgcttgtttaatactcaacttgagtttattggttatttttccatatagcaaagc |
35941398 |
T |
|
| Q |
243 |
tagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcat |
331 |
Q |
| |
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||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35941397 |
tagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagactctttcttgggaagagggagatgcat |
35941309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 35922658 - 35922429
Alignment:
| Q |
118 |
atctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagtttt |
216 |
Q |
| |
|
|||||||||| | |||||||| | ||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| | |||| || |
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| T |
35922658 |
atctataaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctttatgcttgtttattactcaacttgagcctt |
35922559 |
T |
|
| Q |
217 |
ttggttatttttccatatagcaaagctagtcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttggg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||||||| ||||| |||||||||| |
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| T |
35922558 |
ttggttatttttccatatagcaaagctagtcaagctgataaactcaatgagtttattctgtctagaaaatctcagaatcctcccaagacactttcttggg |
35922459 |
T |
|
| Q |
317 |
aagaggaagatgcatctaaaacagattctt |
346 |
Q |
| |
|
|||||| |||||||| |||||| |||||| |
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|
| T |
35922458 |
aagagggagatgcattgaaaacacattctt |
35922429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 52 - 348
Target Start/End: Complemental strand, 35936042 - 35935742
Alignment:
| Q |
52 |
ctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaatag----ata-gaaactaagatata |
146 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| | | || | | ||||||||| ||||||||||||| ||| |||||| || |||| |
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|
| T |
35936042 |
ctcttgtttctttcacatgc-tccaacaacaacaaaacaagtcatgcaaaattgccactgttttttatctataaatagtaagataagaaacttag-tata |
35935945 |
T |
|
| Q |
147 |
tggaaa-ccaagttgagaataagatggagaaggtttctctttatgcttgtttactactcagcgtgagttttttggttatttttccatatagcaaagctag |
245 |
Q |
| |
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| ||| |||| || |||| |||||| |||| |||||||||||||||||||| |||||| | ||||| | |||||||||||||| |||||||||||||| |
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| T |
35935944 |
tacaaaaccaacttaagaacaagatgaagaaaatttctctttatgcttgtttattactcaacttgagtctcttggttatttttccttatagcaaagctag |
35935845 |
T |
|
| Q |
246 |
tcaaactgataaacttgatgagtttattctttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattct |
345 |
Q |
| |
|
|||| ||||||||||||||||| || |||| ||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |||||| |||| |
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|
| T |
35935844 |
tcaagctgataaacttgatgagctttttctgtctagaaaatcacagaatcctcccaagactctttcttgggaagagggagaagcattgaaaacactttct |
35935745 |
T |
|
| Q |
346 |
tct |
348 |
Q |
| |
|
||| |
|
|
| T |
35935744 |
tct |
35935742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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