View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11408_high_8 (Length: 272)
Name: NF11408_high_8
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 50807142 - 50806891
Alignment:
| Q |
7 |
gtagcagagaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807142 |
gtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
50807043 |
T |
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| Q |
107 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatctacaacattattaaaattgattcatcattaattaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807042 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatctacaacattattaaaattgattcatcattaattaa |
50806943 |
T |
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| Q |
207 |
tcaataaatatgctaaaaattcaactttattgatctaacacaataacaacat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50806942 |
tcaataaatatgctaaaaattcaactttattgatctaacacaataacaacat |
50806891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 50868735 - 50868986
Alignment:
| Q |
7 |
gtagcagagaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50868735 |
gtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
50868834 |
T |
|
| Q |
107 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatctacaacattattaaaattgattcatcattaattaa |
206 |
Q |
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| T |
50868835 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatctacaacattattaaaattgattcatcattaattaa |
50868934 |
T |
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| Q |
207 |
tcaataaatatgctaaaaattcaactttattgatctaacacaataacaacat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50868935 |
tcaataaatatgctaaaaattcaactttattgatctaacacaataacaacat |
50868986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 44195906 - 44195989
Alignment:
| Q |
175 |
aacattattaaaattgattcatcattaattaatcaataaatatgctaaaaattcaactttattgatctaacacaataacaacat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44195906 |
aacattattaaaattgattcatcattaattaatcaataaatatgctaaaaattcaactttattgatctaagacaataacaacat |
44195989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 19056297 - 19056459
Alignment:
| Q |
7 |
gtagcagagaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
19056297 |
gtagcagaaaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgtttaattctcaaataatactgagaggct |
19056396 |
T |
|
| Q |
107 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatcta |
173 |
Q |
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| T |
19056397 |
tcagcagat---taataatatatg-aaagcccccgttggtgctcagatgaagcgtgttattgatcta |
19056459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 40704615 - 40704778
Alignment:
| Q |
7 |
gtagcagagaacctaatactccggtggtggctgcaaatgcatcttcaaatggaagaaattcaaaaactggtgttaaattctcaaatgatactgagaggct |
106 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
40704615 |
gtagcagaaaacctaatacgccggtggtggctacaaatgcatcagcaaatggaagaaattcaagaaccggtgttaaattctcaagtgatactgagaggct |
40704714 |
T |
|
| Q |
107 |
tcagcagattaataataatatatgtaaagcccccgttggtgctcagatgaagcgtgttattgatcta |
173 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40704715 |
tcagcagat---taataatatacgtaaagcccccgttggtgctcagatgaagcgtgttattgatcta |
40704778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 33929774 - 33929720
Alignment:
| Q |
171 |
ctacaacattattaaaattgattcatcattaattaatcaataaatatgctaaaaa |
225 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
33929774 |
ctacaacattattaaaattgattcattattaattaatcaattaatatgctaaaaa |
33929720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 2881078 - 2881036
Alignment:
| Q |
130 |
gtaaagcccccgttggtgctcagatgaagcgtgttattgatct |
172 |
Q |
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||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
2881078 |
gtaaagctcctgttggtgctcaaatgaagcgtgttattgatct |
2881036 |
T |
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