View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11408_low_1 (Length: 524)
Name: NF11408_low_1
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 514
Target Start/End: Complemental strand, 27374029 - 27373547
Alignment:
| Q |
15 |
attctcaacatctacaacgtctttacaatagcattacccagaagccaatactattgttgcaaaagttaactataaaatcattaactataaaatcatccta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27374029 |
attctcaacatctacaacgtctttacaatagcattacccagaagccaatactattgttgcaaag----------------ttaactataaaatcatccta |
27373946 |
T |
|
| Q |
115 |
agcnnnnnnncttcatatatacccaaaaacagttctatgatatgataaaaagtggattttaaaagcagtttagagtttgtgtcacagtataacaaatatg |
214 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27373945 |
agctttttttcttcatatatacccaaaaacggttctatgatatgataaaaagtggattttaaaagcagtttagagtttgtgtcacagtataacaaatatg |
27373846 |
T |
|
| Q |
215 |
taaatggatttcataagccaaaaattggaaaaactttagcttctatatttcatttacagtttcctttgtccctcttttgaagcagggctttcactattac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27373845 |
taaatggatttcataagccaaaaattggaaaaactttagcttctatatttcatttacagtttcctttgtccctcttttgaagcagggctttcactattac |
27373746 |
T |
|
| Q |
315 |
acgttgaagattatcaatcaaatgtgttaaactatcacacttttctcatcttttatgctgtctctttgctagggcatacattaagccctagcagagctac |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27373745 |
acgttgaagattatcaatcaaatgtgttaaactatcacacttttctcatcttttatgctgtctctttgctagggcatacattaagccctagcagagctac |
27373646 |
T |
|
| Q |
415 |
atttgtcacatccctccccaacaaagtttgcnnnnnnnccatcttttcattccccagttttgaaggtaatatctctttcccttatttctttttccctttg |
514 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27373645 |
atttgtcacatccctccccaacaaagtttgc-ttttttccatcttttcattccccagttttgaaggtaatatctctttcccttatttctttttccctttg |
27373547 |
T |
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