View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11408_low_2 (Length: 423)
Name: NF11408_low_2
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_low_2 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 34775930 - 34776327
Alignment:
| Q |
9 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34775930 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
34776029 |
T |
|
| Q |
109 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776030 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
34776129 |
T |
|
| Q |
209 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
34776130 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgttttcgagggtttggagt |
34776229 |
T |
|
| Q |
309 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776230 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 24 - 406
Target Start/End: Original strand, 34784157 - 34784539
Alignment:
| Q |
24 |
cttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtggagttcctcaaagaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| | || || ||||||| |||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
34784157 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
34784256 |
T |
|
| Q |
124 |
atggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaatctagtactttgagt |
223 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34784257 |
atggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
34784356 |
T |
|
| Q |
224 |
atgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagtctcttgttgatgttg |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
34784357 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcg |
34784456 |
T |
|
| Q |
324 |
gaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
||||| || |||| ||| ||||| || ||||||||| |||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
34784457 |
cgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 11445523 - 11445126
Alignment:
| Q |
9 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
108 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| |||| ||||||||| || | | || |||| |
|
|
| T |
11445523 |
attctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtg |
11445424 |
T |
|
| Q |
109 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
208 |
Q |
| |
|
| ||||| ||||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| ||||| |
|
|
| T |
11445423 |
gcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaa |
11445324 |
T |
|
| Q |
209 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagt |
308 |
Q |
| |
|
||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| ||| | ||||| || |||||||||| |
|
|
| T |
11445323 |
tctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagt |
11445224 |
T |
|
| Q |
309 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
|| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || |||||||||||||||||| |
|
|
| T |
11445223 |
ctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 11547567 - 11547964
Alignment:
| Q |
9 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
108 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| |||| ||||||||| || | | || |||| |
|
|
| T |
11547567 |
attctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtg |
11547666 |
T |
|
| Q |
109 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
208 |
Q |
| |
|
| ||||| ||||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| ||||| |
|
|
| T |
11547667 |
gcactcctctaagaaatggctcactgaggacaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaa |
11547766 |
T |
|
| Q |
209 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagt |
308 |
Q |
| |
|
||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| ||| | ||||| || |||||||||| |
|
|
| T |
11547767 |
tctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagt |
11547866 |
T |
|
| Q |
309 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
|| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || |||||||||||||||||| |
|
|
| T |
11547867 |
ctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 11507336 - 11507733
Alignment:
| Q |
9 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
108 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| ||| | |||||||| || | | |||| || |
|
|
| T |
11507336 |
attctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatg |
11507435 |
T |
|
| Q |
109 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
208 |
Q |
| |
|
| ||||| | ||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| ||||| |
|
|
| T |
11507436 |
gtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaa |
11507535 |
T |
|
| Q |
209 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagt |
308 |
Q |
| |
|
||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| ||| | ||||| || |||||| ||| |
|
|
| T |
11507536 |
tctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagt |
11507635 |
T |
|
| Q |
309 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
|| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || |||||||||||||||||| |
|
|
| T |
11507636 |
ctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 406
Target Start/End: Complemental strand, 11468334 - 11468116
Alignment:
| Q |
188 |
tttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaac |
287 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||||| || |||||| ||||||| |||||||||||||| |||| | || || | |
|
|
| T |
11468334 |
tttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagcc |
11468235 |
T |
|
| Q |
288 |
gcgtgttcgagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgt |
387 |
Q |
| |
|
||||| ||||||||||| ||| | |||||||| | |||||| ||||| | ||| ||||||||||||||||| ||||| ||| | ||||| || || |
|
|
| T |
11468234 |
atgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagt |
11468135 |
T |
|
| Q |
388 |
ttttgatcaaccacaggtt |
406 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11468134 |
tttagatcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 406
Target Start/End: Original strand, 11523127 - 11523345
Alignment:
| Q |
188 |
tttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaac |
287 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||||| || |||||| ||||||| |||||||||||||| |||| | || || | |
|
|
| T |
11523127 |
tttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagcc |
11523226 |
T |
|
| Q |
288 |
gcgtgttcgagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgt |
387 |
Q |
| |
|
||||| ||||||||||| ||| | |||||||| | |||||| ||||| | ||| ||||||||||||||||| ||||| ||| | ||||| || || |
|
|
| T |
11523227 |
atgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagt |
11523326 |
T |
|
| Q |
388 |
ttttgatcaaccacaggtt |
406 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11523327 |
tttagatcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 1993 - 2390
Alignment:
| Q |
9 |
attctctcacacctccttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtg |
108 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||| |||||||||| || || |||||| ||| | |||||||| || | | |||| || |
|
|
| T |
1993 |
attctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatg |
2092 |
T |
|
| Q |
109 |
gagttcctcaaagaaatggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaa |
208 |
Q |
| |
|
| ||||| | ||||||| ||| ||| || ||||||| | | |||||| | |||| ||| |||| |||||||| | ||||||||||||| ||||| |
|
|
| T |
2093 |
gtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaa |
2192 |
T |
|
| Q |
209 |
tctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaacaaacgcgtgttcgagggtttggagt |
308 |
Q |
| |
|
||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||||| ||| | ||||| || ||||||| || |
|
|
| T |
2193 |
tctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggt |
2292 |
T |
|
| Q |
309 |
ctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
406 |
Q |
| |
|
|| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| ||||| || || |||||||||||||||||| |
|
|
| T |
2293 |
ctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University