View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11408_low_6 (Length: 308)
Name: NF11408_low_6
Description: NF11408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11408_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 414104 - 413838
Alignment:
| Q |
17 |
tcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaat |
116 |
Q |
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| T |
414104 |
tcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaat |
414005 |
T |
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| Q |
117 |
attgtccttaggccgggtttgtatttcggaatcaagctcatcatcatcttcctcttccgccattgcagccattgcagttagtttgaggctaaaggacggg |
216 |
Q |
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| T |
414004 |
attgtccttaggccggctttgtatttcggaatcaagctcatcatcatcttcctcttccgccatt---------gcagttagtttgaggctaaaggacggg |
413914 |
T |
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| Q |
217 |
gatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttgaggcttgaa |
292 |
Q |
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| T |
413913 |
gatgaacatccagcccttgaaatacacttcctagtattcttattacttatttcatcaaactttttcgaggcttgaa |
413838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 7527762 - 7527817
Alignment:
| Q |
22 |
aactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaa |
77 |
Q |
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| T |
7527762 |
aactttgaagtgcaattcttcgcaatatctccatgcttgccgataacttttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 260
Target Start/End: Original strand, 37212138 - 37212350
Alignment:
| Q |
45 |
aatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaatattgtccttaggccgggtttgtatttcg |
144 |
Q |
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| T |
37212138 |
aatatctccatgtttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaaccatgtcctcaggctggctttgcatttca |
37212237 |
T |
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| Q |
145 |
gaatcaagctcatcatcatcttcctcttccgccattgcagccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacact |
244 |
Q |
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| T |
37212238 |
gaatcaacctcatcatc---ttccgctcccgccatggaaaccagttgagttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacact |
37212334 |
T |
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| Q |
245 |
tcctagtattctcatt |
260 |
Q |
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| T |
37212335 |
tcatatgattctcatt |
37212350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 37183694 - 37183896
Alignment:
| Q |
44 |
caatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaatattgtccttaggccgggtttgtatttc |
143 |
Q |
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| T |
37183694 |
caatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatt |
37183793 |
T |
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| Q |
144 |
ggaatcaagctcatcatcatcttcctcttccg-ccattgcagccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaataca |
242 |
Q |
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| T |
37183794 |
tgaatcaacctcatcaccatcttcat-ttctgaccatgtcaaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaataga |
37183892 |
T |
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| Q |
243 |
cttc |
246 |
Q |
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|||| |
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| T |
37183893 |
cttc |
37183896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 37194826 - 37195028
Alignment:
| Q |
44 |
caatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaatattgtccttaggccgggtttgtatttc |
143 |
Q |
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| T |
37194826 |
caatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatt |
37194925 |
T |
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| Q |
144 |
ggaatcaagctcatcatcatcttcctcttccg-ccattgcagccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaataca |
242 |
Q |
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| T |
37194926 |
tgaatcaacctcatcaccatcttcat-ttctgaccatgtcaaccacttcagttagtttgaggctaaaagatggggatagacatccagcccttgaaataga |
37195024 |
T |
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| Q |
243 |
cttc |
246 |
Q |
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|||| |
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| T |
37195025 |
cttc |
37195028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 37202906 - 37202968
Alignment:
| Q |
185 |
ccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcc |
247 |
Q |
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| T |
37202906 |
ccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttcc |
37202968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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