View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11409_high_3 (Length: 498)
Name: NF11409_high_3
Description: NF11409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11409_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 10677191 - 10676721
Alignment:
| Q |
17 |
aacatggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatag |
116 |
Q |
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| T |
10677191 |
aacatggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatag |
10677092 |
T |
|
| Q |
117 |
caagaaagaaagaagataacaatcttgatcttctctcaagaacaaaggaaaacaattctgatttgcacaacctagttgctttttccttttatgttctcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10677091 |
caagaaagaaagaagataacaatcttgatcttctctcaagaacaaaagaaaacaattctgatttgcacaacctagttgctttttccttttatgttctcct |
10676992 |
T |
|
| Q |
217 |
tggtttcctccaattaaggaaccctcaaagtcgggctccatttcagattcatcctaagacatcctttctatccattactagctatcttgcctattacttt |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10676991 |
tggtttcctccaattaaggaaccctcaaagtccggctccatttcagattcatcctaagacatcctttctatccattgctagctatcttgcctattacttg |
10676892 |
T |
|
| Q |
317 |
accctttgggttgggcttaaattttctataccctttagaactaaaaatactcttatggaagtctttggttccctctcattgatttctttggtcttgatgt |
416 |
Q |
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| T |
10676891 |
accctttgggttgggcttaaattttctataccctttagaactaaaaatactcttatggaagtctttggttccctctcattgatttctttggtcttgatgt |
10676792 |
T |
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| Q |
417 |
tgataccagatcactgcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
487 |
Q |
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| T |
10676791 |
tgctaccagatcacagcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
10676721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 10673973 - 10673863
Alignment:
| Q |
20 |
atggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatagcaa |
119 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||| | | |
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| T |
10673973 |
atggatgttgatgtgagtagaggaagaccccatttgaggagatcgttacatactcaaattgttttcaatcatatagtattaagtaacgtccaaataacta |
10673874 |
T |
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| Q |
120 |
gaaagaaagaa |
130 |
Q |
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||||| ||||| |
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| T |
10673873 |
gaaagcaagaa |
10673863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 10673738 - 10673640
Alignment:
| Q |
392 |
tcattgatttctttggtcttgatgttgatac---cagatcactgcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
487 |
Q |
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||||||||||||||||||||||||||| ||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10673738 |
tcattgatttctttggtcttgatgttgctactaccatatcacaataattatggagaatcattaaaatatattgcatacacattattgttccttattcat |
10673640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 487
Target Start/End: Complemental strand, 10602517 - 10602398
Alignment:
| Q |
365 |
actcttatggaagtctttggttccctctcattgatttctttggtcttgatgttgataccagatcactgcaattggggagaatcattaaaatatattgcat |
464 |
Q |
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|||||||||||| | |||||||| || ||||||||||||||||| || |||||| ||||| |||| || ||||||||||||||| |||| ||| ||| |
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| T |
10602517 |
actcttatggaaatttttggttcactttcattgatttctttggtgttaatgttgctaccaaatca---cacttggggagaatcattgaaatgcattacat |
10602421 |
T |
|
| Q |
465 |
acacattattgttccttattcat |
487 |
Q |
| |
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| ||| ||| ||| ||||||||| |
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| T |
10602420 |
atacaatatggtttcttattcat |
10602398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 10673860 - 10673737
Alignment:
| Q |
165 |
aaaacaattctgatttgcacaacctagttgctttttccttttatgttctccttggtttcctccaattaaggaaccctcaaagtcgggctccatttcagat |
264 |
Q |
| |
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|||||||| ||||||||||| ||| ||| |||| || || ||||||||| ||||||||||||||||| || |||| ||| | ||||||||||| | |
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| T |
10673860 |
aaaacaatcttgatttgcacacccttgttagttttgccattcatgttctccctggtttcctccaattaatgagcccttaaaaccccactccatttcaggt |
10673761 |
T |
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| Q |
265 |
tcatcctaagacatcctttctatc |
288 |
Q |
| |
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|||||||||||| |||||| |||| |
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| T |
10673760 |
tcatcctaagacgtcctttatatc |
10673737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 482
Target Start/End: Complemental strand, 10613411 - 10613294
Alignment:
| Q |
365 |
actcttatggaagtctttggttccctctcattgatttctttggtcttgatgttgataccagatcactgcaattggggagaatcattaaaatatattgcat |
464 |
Q |
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|||||| | ||||||||||| || || ||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||| |||| ||||||||||||| |
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| T |
10613411 |
actcttttagaagtctttgggtcgctttcatttatttccatggtcctaatgttgttaccaaatcacacttattggggggaaccattgaaatatattgcat |
10613312 |
T |
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| Q |
465 |
acacattattgttcctta |
482 |
Q |
| |
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||||| ||| ||| |||| |
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| T |
10613311 |
acacaatatggttgctta |
10613294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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