View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11409_low_1 (Length: 613)
Name: NF11409_low_1
Description: NF11409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11409_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 602
Target Start/End: Complemental strand, 10677301 - 10676721
Alignment:
| Q |
19 |
tttagtgattgtagcaaaccctaattcgtgtgtatcatcagcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacnnn |
118 |
Q |
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| T |
10677301 |
tttagtgattgtagcaaaccctaattcgtgtgtatca---gcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacaaa |
10677205 |
T |
|
| Q |
119 |
nnnnncctcttataacatggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagt |
218 |
Q |
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| T |
10677204 |
aaaaacctcttataacatggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagt |
10677105 |
T |
|
| Q |
219 |
aacgtccaaatagcaagaaagaaagaagataacaatcttgatcttctctcaagaacaaaggaaaacaattctgatttgcacaacctagttgctttttcct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10677104 |
aacgtccaaatagcaagaaagaaagaagataacaatcttgatcttctctcaagaacaaaagaaaacaattctgatttgcacaacctagttgctttttcct |
10677005 |
T |
|
| Q |
319 |
tttatgttctccttggtttcctccaattaaggaaccctcaaagtcgggctccatttcagattcatcctaagacatcctttctatccattactagctatct |
418 |
Q |
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| T |
10677004 |
tttatgttctccttggtttcctccaattaaggaaccctcaaagtccggctccatttcagattcatcctaagacatcctttctatccattgctagctatct |
10676905 |
T |
|
| Q |
419 |
tgcctattactttaccctttgggttgggcttaaattttctataccctttagaactaaaaatactcttatggaagtctttggttccctctcattgatttct |
518 |
Q |
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| T |
10676904 |
tgcctattacttgaccctttgggttgggcttaaattttctataccctttagaactaaaaatactcttatggaagtctttggttccctctcattgatttct |
10676805 |
T |
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| Q |
519 |
ttggtcttgatgttgataccagatcactgcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
602 |
Q |
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| T |
10676804 |
ttggtcttgatgttgctaccagatcacagcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
10676721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 10673973 - 10673863
Alignment:
| Q |
135 |
atggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaatagcaa |
234 |
Q |
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| T |
10673973 |
atggatgttgatgtgagtagaggaagaccccatttgaggagatcgttacatactcaaattgttttcaatcatatagtattaagtaacgtccaaataacta |
10673874 |
T |
|
| Q |
235 |
gaaagaaagaa |
245 |
Q |
| |
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||||| ||||| |
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| T |
10673873 |
gaaagcaagaa |
10673863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 507 - 602
Target Start/End: Complemental strand, 10673738 - 10673640
Alignment:
| Q |
507 |
tcattgatttctttggtcttgatgttgatac---cagatcactgcaattggggagaatcattaaaatatattgcatacacattattgttccttattcat |
602 |
Q |
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||||||||||||||||||||||||||| ||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10673738 |
tcattgatttctttggtcttgatgttgctactaccatatcacaataattatggagaatcattaaaatatattgcatacacattattgttccttattcat |
10673640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 602
Target Start/End: Complemental strand, 10602517 - 10602398
Alignment:
| Q |
480 |
actcttatggaagtctttggttccctctcattgatttctttggtcttgatgttgataccagatcactgcaattggggagaatcattaaaatatattgcat |
579 |
Q |
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|||||||||||| | |||||||| || ||||||||||||||||| || |||||| ||||| |||| || ||||||||||||||| |||| ||| ||| |
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| T |
10602517 |
actcttatggaaatttttggttcactttcattgatttctttggtgttaatgttgctaccaaatca---cacttggggagaatcattgaaatgcattacat |
10602421 |
T |
|
| Q |
580 |
acacattattgttccttattcat |
602 |
Q |
| |
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| ||| ||| ||| ||||||||| |
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| T |
10602420 |
atacaatatggtttcttattcat |
10602398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 10673860 - 10673737
Alignment:
| Q |
280 |
aaaacaattctgatttgcacaacctagttgctttttccttttatgttctccttggtttcctccaattaaggaaccctcaaagtcgggctccatttcagat |
379 |
Q |
| |
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|||||||| ||||||||||| ||| ||| |||| || || ||||||||| ||||||||||||||||| || |||| ||| | ||||||||||| | |
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| T |
10673860 |
aaaacaatcttgatttgcacacccttgttagttttgccattcatgttctccctggtttcctccaattaatgagcccttaaaaccccactccatttcaggt |
10673761 |
T |
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| Q |
380 |
tcatcctaagacatcctttctatc |
403 |
Q |
| |
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|||||||||||| |||||| |||| |
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| T |
10673760 |
tcatcctaagacgtcctttatatc |
10673737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 597
Target Start/End: Complemental strand, 10613411 - 10613294
Alignment:
| Q |
480 |
actcttatggaagtctttggttccctctcattgatttctttggtcttgatgttgataccagatcactgcaattggggagaatcattaaaatatattgcat |
579 |
Q |
| |
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|||||| | ||||||||||| || || ||||| ||||| ||||| | |||||| ||||| ||||| ||||||| ||| |||| ||||||||||||| |
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| T |
10613411 |
actcttttagaagtctttgggtcgctttcatttatttccatggtcctaatgttgttaccaaatcacacttattggggggaaccattgaaatatattgcat |
10613312 |
T |
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| Q |
580 |
acacattattgttcctta |
597 |
Q |
| |
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||||| ||| ||| |||| |
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| T |
10613311 |
acacaatatggttgctta |
10613294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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