View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11409_low_2 (Length: 593)
Name: NF11409_low_2
Description: NF11409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11409_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 311 - 582
Target Start/End: Complemental strand, 46086747 - 46086476
Alignment:
| Q |
311 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctacgatttacaatgattgtgtagcaccgctcgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46086747 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctactatttacgatgattgtgtagcaccgctcgt |
46086648 |
T |
|
| Q |
411 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttatgtaagccttatgattacga |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
46086647 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttacgtaagccttatgattgcga |
46086548 |
T |
|
| Q |
511 |
aaaacttatttgagaaacttatgctatatatttattcgacgtgtgaattgtaattgagcattttcccttcat |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
46086547 |
aaaacttatttgagaaacttatgctatatatttattctacgtgtgaattgtaattgagcattttcccctcat |
46086476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 46087040 - 46086822
Alignment:
| Q |
17 |
caacttcaccagctccaaaatctatgatcaatccaatgctgcattgatttttgcattcaattcggggtttaggttttccatgttagcttgaaatggagaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46087040 |
caacttcaccagctccaaaatctatgatcaatccaatgctgcattgatttttgcattcaattcggggtttaggttttccatgttagcttgaaatggagaa |
46086941 |
T |
|
| Q |
117 |
cacagattccacacaaagcgtgcgagttgccgttaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttcct |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46086940 |
cacagattccacacagagcgtgcgagttgccgtcaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgttgttcct |
46086841 |
T |
|
| Q |
217 |
ggcgaacctcaggtgctac |
235 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
46086840 |
ggcgaacctcaggtgctac |
46086822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University