View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11409_low_4 (Length: 383)
Name: NF11409_low_4
Description: NF11409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11409_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 50601704 - 50601346
Alignment:
| Q |
10 |
atgaagtaaaaatttgtttgtgatatgggtagaccatgataagttttggtaaaataatctaatctaacagtggacaaaaatagtctaacagggaccgata |
109 |
Q |
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| T |
50601704 |
atgaagtaaaaatttgtttgtgatatgggtagactatgataagttttggtaaaataatctaatctaacagtggataaaagtggtctaacatggaccgata |
50601605 |
T |
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| Q |
110 |
ttttgacaggtccattttatactgaacctgacttgaaagcactaaacatttcaccaaacttgtatgatgtatcctccttacctttaagtcaaacctacaa |
209 |
Q |
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| T |
50601604 |
ttttgacaggtccattttatactgaatttgacttaaaagcactaaacatttcaccaaacttgtatgatgtatcctccttacctttaagtcaaacctacaa |
50601505 |
T |
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| Q |
210 |
accaagaggatttcaaatgaaaaccttttatggcactgaagtcgtgttgatttgaatggttacacttattacacactcacaaaatggattagtaaagtga |
309 |
Q |
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| T |
50601504 |
accaagaggatttcaaatgcaaaccttttatggcactgaagtcgtgttgatttgaatggttacacttattacacactcacaaaatggattagtaaagtga |
50601405 |
T |
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| Q |
310 |
atttagtttacnnnnnnnagtttctca-ttgtattttccactaaaggcaatcatgtttg |
367 |
Q |
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| T |
50601404 |
atttagtttactttttttagtttctcacttgtattttccactaaaggcaatcatgtttg |
50601346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 54431611 - 54431507
Alignment:
| Q |
36 |
gggtagaccatgataagttttggtaaaataatctaatctaacagtggacaaaaatagtctaacagggaccgatattttgacaggtccattttatactgaa |
135 |
Q |
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| T |
54431611 |
gggtagaccatgataagttttggcaaaataatttaatctaacagtggacaaaagtggtctaacatggaccgatattttgacaggtccattttatactgaa |
54431512 |
T |
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| Q |
136 |
cctga |
140 |
Q |
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||||| |
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| T |
54431511 |
cctga |
54431507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 13069827 - 13069888
Alignment:
| Q |
64 |
taatctaatctaacagtggacaaaaatagtctaacagggaccgatattttgacaggtccattt |
126 |
Q |
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| T |
13069827 |
taatctaatctaacagttgacaaaagtggtctaacatggaccaatatttt-ccaggtccattt |
13069888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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