View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11409_low_5 (Length: 321)

Name: NF11409_low_5
Description: NF11409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11409_low_5
NF11409_low_5
[»] chr7 (1 HSPs)
chr7 (12-306)||(48964411-48964705)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 48964411 - 48964705
Alignment:
Q  12 atgaaccattaatgatttgtcttggcaattttaggggttatattgttattaggcatatagggctgtacagatgcccccatcttgaagcgcactaaagaga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48964411 atgaaccattaatgatttgtcttggcaattttaggggttatattgttattaggcatatagggctgtacagatgcccccatcttgaagcgcactaaagaga 48964510  T
Q  112 gatttgtaattggaaaatgactaataattttgtcatcccttattaaactatgccagaagactgaatggaatgatcatggttaactgaagtatgtaaaaag 211  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48964511 gatttctaattggaaaatgactaataattttgtcatcccttattaaactatgccagaagactgaatggaatgatcatggttaactgaagtatgtaaaaag 48964610  T
Q  212 tttcatgttccagtgctttgcattgaataaaagagttagaagaaagaaagtttagaaagaatgagatactcatcctttgttccttaccttgtttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48964611 tttcatgttccagtgctttgcattgaataaaagagttagaagaaagaaagtttagaaagaatgagatactcatcctttgttccttaccttgtttt 48964705  T

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