View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_high_18 (Length: 343)

Name: NF1140_high_18
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_high_18
NF1140_high_18
[»] chr5 (3 HSPs)
chr5 (1-197)||(4292544-4292740)
chr5 (215-325)||(4292760-4292868)
chr5 (269-329)||(4985599-4985659)
[»] chr3 (5 HSPs)
chr3 (237-329)||(46344412-46344504)
chr3 (239-329)||(41877688-41877778)
chr3 (269-329)||(25142658-25142718)
chr3 (242-329)||(40478268-40478355)
chr3 (239-329)||(11327108-11327198)
[»] chr8 (6 HSPs)
chr8 (238-326)||(38504169-38504257)
chr8 (238-325)||(30927916-30928003)
chr8 (234-329)||(29509261-29509356)
chr8 (235-329)||(41273511-41273605)
chr8 (236-329)||(28156200-28156293)
chr8 (236-329)||(43587638-43587731)
[»] scaffold0618 (1 HSPs)
scaffold0618 (271-329)||(3392-3450)
[»] scaffold0019 (1 HSPs)
scaffold0019 (238-329)||(72365-72456)
[»] chr1 (5 HSPs)
chr1 (239-329)||(37669398-37669488)
chr1 (238-329)||(7371929-7372020)
chr1 (234-329)||(43196070-43196165)
chr1 (269-329)||(29632464-29632524)
chr1 (269-325)||(50145786-50145842)
[»] chr7 (6 HSPs)
chr7 (237-329)||(30864398-30864490)
chr7 (269-329)||(16645660-16645720)
chr7 (269-329)||(17620021-17620081)
chr7 (239-329)||(33050183-33050273)
chr7 (285-329)||(33881686-33881730)
chr7 (269-329)||(40507159-40507219)
[»] chr6 (3 HSPs)
chr6 (269-316)||(24881758-24881805)
chr6 (238-329)||(15364657-15364749)
chr6 (229-261)||(19789125-19789157)
[»] chr2 (6 HSPs)
chr2 (237-329)||(34144532-34144624)
chr2 (238-329)||(44484637-44484728)
chr2 (238-329)||(11442671-11442762)
chr2 (280-329)||(12175309-12175358)
chr2 (271-319)||(30192342-30192390)
chr2 (274-326)||(45372511-45372563)
[»] scaffold0576 (1 HSPs)
scaffold0576 (238-329)||(9428-9520)
[»] chr4 (5 HSPs)
chr4 (237-329)||(35037607-35037699)
chr4 (237-324)||(54165147-54165234)
chr4 (239-329)||(4550334-4550424)
chr4 (239-325)||(51224823-51224909)
chr4 (236-329)||(24235317-24235410)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 4292544 - 4292740
Alignment:
Q  1 tttgagataaaattcaaaacgaacagataaacaacaaattgaattggaccggattgattgggtaatcctactctatactctgtgtgatctnnnnnnnttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  4292544 tttgagataaaattcaaaacgaacagataaacaacaaattgaattggaccggattgattgggtaatcctactctatactctgtgtgatctaaaaaaattc 4292643  T
Q  101 tcaaatatttaggggctttgtaaaaaacagaagtgtaaggacctcatagttttagtgattaacacaccataaacgtgacgaaatggaggatcatatc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292644 tcaaatatttaggggctttgtaaaaaacagaagtgtaaggacctcataattttagtgattaacacaccataaacgtgacgaaatggaggatcatatc 4292740  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 4292760 - 4292868
Alignment:
Q  215 gacaaaggaggatcatatctttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttatta 314  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||       |||||||||| |||| ||||||||| || || | |||||| | |||    
T  4292760 gacaaaggaggatcatatcttta--agaaatgatatatgtagaaccatttttttacaatttttggacaactttctctctcatgtttacatgatgctctta 4292857  T
Q  315 tcctccctctt 325  Q
    ||||| |||||    
T  4292858 tcctctctctt 4292868  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 4985599 - 4985659
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||| |||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||||    
T  4985599 acaactttttaacaattttctctctcatactcatattatgtttttattctctctcttcctt 4985659  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 46344412 - 46344504
Alignment:
Q  237 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||||| |||||||| |       |||||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||    
T  46344412 aagagaaatgatatttgtacaactaatttgttacaatttttgtacaattttctctctcatattcatatgatggtcttatcctctctcttcctt 46344504  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 41877688 - 41877778
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  41877688 gagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatgttattatcctctctcttcctt 41877778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 25142658 - 25142718
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||| |||| ||||||||| ||||| ||| ||| ||||||||||||||||| |||||||||    
T  25142658 acaactttttaacaattttatctcttatactcacatgatgttattatcctctctcttcctt 25142718  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 40478355 - 40478268
Alignment:
Q  242 aaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||| ||||||||||       |||| ||||  |||| ||||| ||| ||||||| ||||||||||||||||| |||||||||    
T  40478355 aaatgatatttgtacaaccattttgctacaactttttgacaactttctatctcatattcacatgatgttattatcctctctcttcctt 40478268  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 11327108 - 11327198
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 11327198  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 38504169 - 38504257
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttc 326  Q
    ||||||||||||| ||||||||||       |||||||||  |||| ||||||||||||| |||||||||||| |||||||| ||||||    
T  38504169 agagaaatgatatttgtacaaccattttgctacaattttttgacaactttctctctaatactcatatgatgttgttatcctcactcttc 38504257  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 30928003 - 30927916
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 325  Q
    ||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| |||||||||| | |||||||| |||||    
T  30928003 agagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactcatatgatggtcttatcctctctctt 30927916  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 29509261 - 29509356
Alignment:
Q  234 tttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||| |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||| ||||||||||| |||||||||    
T  29509261 tttatgagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatattattatcctctctcttcctt 29509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 41273511 - 41273605
Alignment:
Q  235 ttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||||||| ||||||| ||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  41273511 ttaagagaaatgatatttgtacaaacaatttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 41273605  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 28156200 - 28156293
Alignment:
Q  236 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| | | || ||||| |||| ||| |||||||||    
T  28156200 taagagaaatgatatttgtacaaccattttggtacaatttttgtacaactttctctctcatacttacattatgtttttattctctctcttcctt 28156293  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 43587638 - 43587731
Alignment:
Q  236 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||||| |||| |||||       |||| ||||  |||||||||||||| ||| ||| |||||||| |||| ||| |||||||||    
T  43587638 taagagaaatgatatttgtataaccattttgctacaactttttgacaattttctctctcatactcacatgatgttgttattctctctcttcctt 43587731  T

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Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 3392 - 3450
Alignment:
Q  271 aatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||    
T  3392 aatttttgtacaattttctctctcatattcatatgatggtcttatcctctctcttcctt 3450  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 72365 - 72456
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||| ||||||||||       |||| |||||||||||||||||||| ||||||| ||||  || |||||||| |||||||||    
T  72365 agagaaatgatatttgtacaaccattttgcaacaacttttgaacaattttctctctcatattcacatgacatttttatcctctctcttcctt 72456  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 37669398 - 37669488
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||| ||||||| ||       |||| |||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  37669398 gagaaatgatatttgtacaatcattttgatacaactttttaacaaatttctctctcatattcacatgatgttattatcctctctcttcctt 37669488  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 7372020 - 7371929
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||| |||||||| |       |||||||||| |||||||||||||| ||| | |||||||| | |||||||| ||| |||||    
T  7372020 agagaaatgatatttgtacaactaatttatgacaatttttgtacaattttctctctcatacttatatgatggtcttatcctctctcctcctt 7371929  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 43196165 - 43196070
Alignment:
Q  234 tttaagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||||||| |||||| |||       |||| ||||  |||||||||||||| ||| ||| |||||||| |||| ||| |||||||||    
T  43196165 tttaagagaaatgatatttgtacatccattttgctacaactttttgacaattttctctctcatactcacatgatgttgttattctctctcttcctt 43196070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 29632464 - 29632524
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||  |||||||||||||| | |||||||| ||||| |||| ||| |||||||||    
T  29632464 acaattttttgacaattttctctctcacattcatattatgtttttattctctctcttcctt 29632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 50145842 - 50145786
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 325  Q
    |||| ||||||| |||||||||||| ||| |||||||||||| ||||| || |||||    
T  50145842 acaacttttgaataattttctctctcatactcatatgatgttgttatcatctctctt 50145786  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 30864490 - 30864398
Alignment:
Q  237 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| |||||||||| | |||||||| |||||||||    
T  30864490 aagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcatatgatggtcttatcctctctcttcctt 30864398  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 16645720 - 16645660
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  16645720 acaattttttgacaactttctctctcatagtcacatgatgttattatcctctctcttcctt 16645660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 17620081 - 17620021
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  17620081 acaattttttgacaactttctctctcatagtcacatgatgttattatcctctctcttcctt 17620021  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 33050183 - 33050273
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||| ||||||||||       |||| ||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  33050183 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 33050273  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 33881730 - 33881686
Alignment:
Q  285 tttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  33881730 tttctctctcatactcacatgatgttattatcctctctcttcctt 33881686  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 40507159 - 40507219
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||  |||||||||||||| ||| |||||| ||||| |||| ||| |||||||||    
T  40507159 acaattttttgacaattttctctcttatactcatattatgtttttattctctctcttcctt 40507219  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 24881805 - 24881758
Alignment:
Q  269 acaatttttgaacaattttctctctaatattcatatgatgttattatc 316  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  24881805 acaacttttgaacaattttctctcttatattcacatgatgttattatc 24881758  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 15364657 - 15364749
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatga-tgttattatcctccctcttcctt 329  Q
    ||||||||||||| ||||||||||       ||||||||| ||||| ||| ||||| ||| ||| |||| ||||||||||||| |||||||||    
T  15364657 agagaaatgatatttgtacaaccattttgctacaattttttaacaactttgtctctcatactcacatgattgttattatcctctctcttcctt 15364749  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 19789157 - 19789125
Alignment:
Q  229 atatctttaagagaaatgatatatgtacaacca 261  Q
    |||||||||||||||||||||| ||||||||||    
T  19789157 atatctttaagagaaatgatatttgtacaacca 19789125  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 329
Target Start/End: Complemental strand, 34144624 - 34144532
Alignment:
Q  237 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| ||| |||||| | |||||||| |||||||||    
T  34144624 aagagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttcctt 34144532  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 44484728 - 44484637
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||| ||||||||||       |||||||||| |||| ||||||||| ||| ||| |||||||| ||||| || |||||||||    
T  44484728 agagaaatgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcatactcacatgatgttcttatcatctctcttcctt 44484637  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 11442671 - 11442762
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||| ||||||||||       |||||||||  |||| ||||||||| ||| |||||| || || |||| |||||||||||||    
T  11442671 agagaaatgatatttgtacaaccatttcattacaattttttgacaactttctctctcatactcatattatattcttattctccctcttcctt 11442762  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 12175358 - 12175309
Alignment:
Q  280 acaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||| ||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  12175358 acaactttatctctcatactcatatgatgttattatcctctctcttcctt 12175309  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 30192390 - 30192342
Alignment:
Q  271 aatttttgaacaattttctctctaatattcatatgatgttattatcctc 319  Q
    ||||||||||||||||||||||| ||| ||| ||||| || ||||||||    
T  30192390 aatttttgaacaattttctctctcatactcacatgatatttttatcctc 30192342  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 45372511 - 45372563
Alignment:
Q  274 ttttgaacaattttctctctaatattcatatgatgttattatcctccctcttc 326  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||| || ||||||    
T  45372511 tttttaacaattttctctcttatactcacatgatgttattatcatctctcttc 45372563  T

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Target: scaffold0576 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 9428 - 9520
Alignment:
Q  238 agagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatga-tgttattatcctccctcttcctt 329  Q
    ||||||||||||| ||||||||||       ||||||||| ||||| ||| ||||| ||| ||| |||| ||||||||||||| |||||||||    
T  9428 agagaaatgatatttgtacaaccattttgctacaattttttaacaactttgtctctcatactcacatgattgttattatcctctctcttcctt 9520  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 35037607 - 35037699
Alignment:
Q  237 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||||| ||||||||||       |||| ||||| ||||| |||||||| ||||||| || ||||| |||| ||| |||||||||    
T  35037607 aagagaaatgatatttgtacaaccattttgatacaacttttgtacaatattctctctcatattcacattatgtttttattctctctcttcctt 35037699  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 54165234 - 54165147
Alignment:
Q  237 aagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctct 324  Q
    |||||||||||||| ||||||||||       |||||||||  |||| ||| ||||| ||| ||| ||||||||||||||||| ||||    
T  54165234 aagagaaatgatatttgtacaaccattttactacaattttttgacaactttttctctcatactcacatgatgttattatcctctctct 54165147  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 4550334 - 4550424
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    |||||||||||| ||||||| ||       |||| |||| ||||| ||||||||  ||| | ||||||||||||||||||| |||||||||    
T  4550334 gagaaatgatatttgtacaatcattttgctacaactttttaacaactttctctcccatacttatatgatgttattatcctctctcttcctt 4550424  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 51224909 - 51224823
Alignment:
Q  239 gagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctctt 325  Q
    |||||||||||| ||||||||||       |||| ||||  |||| ||||||||| ||| ||| ||||||||||||||||| |||||    
T  51224909 gagaaatgatatttgtacaaccattttgctacaactttttgacaactttctctctcatactcacatgatgttattatcctctctctt 51224823  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 24235317 - 24235410
Alignment:
Q  236 taagagaaatgatatatgtacaaccannnnnnnacaatttttgaacaattttctctctaatattcatatgatgttattatcctccctcttcctt 329  Q
    ||||||||||||||| ||||||| ||       |||||||||| |||| ||||||||| ||| ||| || ||| | |||||||| |||||||||    
T  24235317 taagagaaatgatatttgtacaatcaatttgtgacaatttttgtacaactttctctctcatactcacataatggttttatcctctctcttcctt 24235410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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