View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_high_20 (Length: 326)

Name: NF1140_high_20
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_high_20
NF1140_high_20
[»] chr4 (2 HSPs)
chr4 (29-301)||(4384376-4384648)
chr4 (151-301)||(24068876-24069026)
[»] chr7 (4 HSPs)
chr7 (142-203)||(22603756-22603817)
chr7 (123-212)||(21205979-21206068)
chr7 (123-212)||(21854209-21854298)
chr7 (151-200)||(22635357-22635406)
[»] chr3 (1 HSPs)
chr3 (122-297)||(25093185-25093360)
[»] chr5 (1 HSPs)
chr5 (121-297)||(29554559-29554735)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 4384648 - 4384376
Alignment:
Q  29 atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattgctttatatcgaatcgaataaaataagtaattttacctgg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  4384648 atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattactttatatcaaatcgaataaaataagtatttttacctgg 4384549  T
Q  129 attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384548 attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt 4384449  T
Q  229 ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384448 ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct 4384376  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 24068876 - 24069026
Alignment:
Q  151 gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactc 250  Q
    ||||||||||||||||  || ||| ||||||| ||||| ||||||||||||||||| ||||||||    |  ||| |  ||  || | |||||||||  |    
T  24068876 gcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaacaagattaaactttgcagggtcactactagcattaaaatttccaaaac 24068975  T
Q  251 ctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct 301  Q
    ||  |||||||||||||||||| || ||||||||||| | |||||||||||    
T  24068976 cttgaccaacaacaaagaaattaaatccatgaagatgcaaaggatgactct 24069026  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 22603817 - 22603756
Alignment:
Q  142 aatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaac 203  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  22603817 aatctaatggcaacccaaccaccagcaggaacaccaacagtgttcctttcaacaggatcaac 22603756  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21206068 - 21205979
Alignment:
Q  123 acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa 212  Q
    |||||||||||| |||  |||||| || |||||||| ||||||| ||| |||||||| || ||||||||||| |||||||||||||||||    
T  21206068 acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacgggatcaacaaggttaaa 21205979  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21854298 - 21854209
Alignment:
Q  123 acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa 212  Q
    |||||||||||| |||  |||||| || |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||| |||||    
T  21854298 acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacaggatcaacaagattaaa 21854209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 22635357 - 22635406
Alignment:
Q  151 gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatc 200  Q
    |||||||| ||||||||||| |||||| |||| |||||||| ||||||||    
T  22635357 gcaacccatccaccagctggaacaccagcagtattcctttcgacaggatc 22635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 25093360 - 25093185
Alignment:
Q  122 tacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttga 221  Q
    ||||||||||||||||  ||||||| || |||  |||||| |||||||| ||||| || || ||||| || |||||||||||||| |||||||| |||      
T  25093360 tacctggattatcagccttgaatctgatagcagtccaacctccagctggaacacctactgtattcctctccacaggatcaacaagattaaacttttttac 25093261  T
Q  222 atcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatga 297  Q
    ||| ||||||  |||| | || ||   ||| |||||||| ||||||||||| || ||||||||||||| |||||||    
T  25093260 atcctttttagaatcaaagttgccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatga 25093185  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 29554735 - 29554559
Alignment:
Q  121 ttacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttg 220  Q
    ||||||||||||||||| |||||||| || |||  ||| ||||||| ||| |||||||| || || || || ||||||||||| |  |||||||| || |    
T  29554735 ttacctggattatcagccctgaatctgatagcagtccatccaccagatggaacaccaactgtatttctctccacaggatcaaccaaattaaactttttag 29554636  T
Q  221 aatcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatga 297  Q
     ||| ||||||  || | |||| ||   |||  ||||||| |||||||||||||| ||||| ||||||| |||||||    
T  29554635 tatcctttttaggattaaaattcccttgtcccttaccaactacaaagaaattgaatccatgtagatgaataggatga 29554559  T

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