View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_high_23 (Length: 308)
Name: NF1140_high_23
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 44531719 - 44531999
Alignment:
| Q |
1 |
aattgcaaccattgttgctgcaagttggagaaggtaaagcattgcataggttgctactacatgagagtttagaaaaggttgaggannnnnnnggatcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44531719 |
aattgcaaccattgttgctgcaagttggagaaggtaaagcattgcataggttgctactacatgagagtttagaaaaggttgaggatttttttggatcaaa |
44531818 |
T |
|
| Q |
101 |
aattggtgttggttgtttgtaacattgtgaacaaggttcacattgagtccatatgaggtcacttcctgtatccaaaactgctgggtaagaaattggtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531819 |
aattggtgttggttgtttgtaacattgtgaacaaggttcacattgagtccatatgaggtcacttcctgtatccaaaactgctgggtaagaaattggtggt |
44531918 |
T |
|
| Q |
201 |
gttccaatggatagttccattagatactcaccgttcccagcgtgaaccggtgcttccacttgagatgaatcttcagttgtg |
281 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44531919 |
gttccaatggatagttccattagatactcaccgtttccggcgtgaaccggtgcttccacttgagatgaatcttcagttgtg |
44531999 |
T |
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