View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_high_33 (Length: 212)
Name: NF1140_high_33
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 10697725 - 10697881
Alignment:
| Q |
20 |
ctcgtgaatcactaatcatctacatagcacaactaactataatttttagatgtaaaaatatacattatttttgtgggttgggtttggaggtttagggttc |
119 |
Q |
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| T |
10697725 |
ctcgtgaatcactaatcatctacatagcacaactaactataatttttagatgtaaaaatatacattatttttgtgggttgggtttggaggtttaaggttc |
10697824 |
T |
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| Q |
120 |
aaattctaacaaagagaaaaaactaacatagcaactaacataataatatttgtcatt |
176 |
Q |
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| T |
10697825 |
aaattctaacaaagagaaaaaactaacatagcaactaatatactaatatttatcatt |
10697881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 13762239 - 13762195
Alignment:
| Q |
132 |
agagaaaaaactaacatagcaactaacataataatatttgtcatt |
176 |
Q |
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| T |
13762239 |
agagaaaaaactaacataacaattaacatattaatatttgtcatt |
13762195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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