View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_high_7 (Length: 453)
Name: NF1140_high_7
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_high_7 |
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| [»] scaffold0256 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 21549663 - 21550076
Alignment:
| Q |
10 |
gcaaagggaagtcaaggtctaaagggtttgataaatcgaaatattgatgtttcatttgtcatatgctcggtcccttctagaagaattgtcctaacaaagg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21549663 |
gcaaagggaagtcaaggtctaaagggtttgataaatcgaaatattgatgtttcatttgtcatatgctcggtcccttcaagaagaattgtcctaacaaagg |
21549762 |
T |
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| Q |
110 |
agaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaaccnnnnnnnn |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21549763 |
agaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttatgagagtgggggtgcactagcactcacaagttggaaaccgaaaaaa- |
21549861 |
T |
|
| Q |
210 |
gttgcgtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaa |
309 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549862 |
gttgcgtcttgga-tcaagctgctcttatcatgtgtgcccgaaaaaggagtattttgagactttagagctaaaagtatgcggagtcgttcggcttggaaa |
21549960 |
T |
|
| Q |
310 |
caacaaggcttgaaaagttcaaggtatgtgtaccattcgtctgaagatgttagttaatcgtaaattccttaaacctgtttaatagtctagattattaaac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21549961 |
caacaaggcttgaaaagttcaaggtatgtgtaccatttgtctgaagatgttagttaatcgtaaattccttaagcctgtttaatagtctagattattaaac |
21550060 |
T |
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| Q |
410 |
atggcatgtgtaaagt |
425 |
Q |
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|||||||||||||||| |
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| T |
21550061 |
atggcatgtgtaaagt |
21550076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 349
Target Start/End: Complemental strand, 24078008 - 24077691
Alignment:
| Q |
33 |
gggtttgataaatcgaaatattgatgtttcatttgtcatatgctcggtcccttctagaagaattgtcctaacaaaggagaaaatggtagttatttcgttc |
132 |
Q |
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|||||||||||||| || ||| ||| |||||||||||||| | |||| |||| ||||| |||||||| |||| |||| ||||||||||| || ||| |
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| T |
24078008 |
gggtttgataaatcaaagtatcgatatttcatttgtcataaacatggtcacttcaagaaggattgtcctgacaagggaggaaatggtagttcttctgttt |
24077909 |
T |
|
| Q |
133 |
aagttgtagtttcct-agatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaaccnnnnnnnngttgcgtcttggaatcaggctg |
231 |
Q |
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|||||| | | | | ||||||||||||| |||||||| ||||||| |||| ||||||||||| || | |||| |||||||| ||||| || |
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| T |
24077908 |
aagttgcaatggcgtccgatgaagatggttatgagagtgcgggtgcattagcgatcacaagttgggaatcagagaagagttgggtcttggactcagggtg |
24077809 |
T |
|
| Q |
232 |
ctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaacaaggcttgaaaagttcaa |
331 |
Q |
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||||||||| ||| | |||||| ||||| |||||||| || ||||||| | | ||||| ||||| || ||| ||||||||||| ||||| ||| |
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| T |
24077808 |
ctcttatcacatgtttttgggaaaggaatattttgagactttggatctaaaagaaggtggagttgttcgactcaaaaataacaaggcttgcaaagtccaa |
24077709 |
T |
|
| Q |
332 |
ggtatgtgtaccattcgt |
349 |
Q |
| |
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| |||| |||| ||||| |
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| T |
24077708 |
cgcatgtctaccgttcgt |
24077691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 21198153 - 21198116
Alignment:
| Q |
35 |
gtttgataaatcgaaatattgatgtttcatttgtcata |
72 |
Q |
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| T |
21198153 |
gtttgataaatcgaaatatcgatgtttcatttgtcata |
21198116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 34841679 - 34841525
Alignment:
| Q |
47 |
gaaatattgatgtttcatttgtcatatgctcggtcccttctagaagaattgtcctaacaaaggagaaaatggtagttatttcgttcaagttgtagt---t |
143 |
Q |
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||||||| |||||||||||||||||| || || || |||| ||||| |||||||||| || || | |||||||||| || |||||||||| ||| | |
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| T |
34841679 |
gaaatatcgatgtttcatttgtcataagcccgatcacttcaagaagcattgtcctaa-aatgggggcaatggtagttcttcggttcaagttgcagtgact |
34841581 |
T |
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| Q |
144 |
tcctagatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc |
201 |
Q |
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||| ||||||||||||| ||||||| ||||||||||| |||||| ||||||||| |
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| T |
34841580 |
tcc--gatgaagatggttaggagagtgcaggtgcactagcggtcacaaattggaaacc |
34841525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 360
Target Start/End: Original strand, 10628633 - 10628740
Alignment:
| Q |
253 |
aaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaacaaggcttgaaaagttcaaggtatgtgtaccattcgtctg |
352 |
Q |
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||||||||| || || ||||||||||| |||| | | ||||| ||| | ||||| || || |||||||| ||| ||||||||||| |||| |||||||| |
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| T |
10628633 |
aaaggagtactttgaaactttagagctgaaagaaggtggagttgtttgccttggtaataataaggcttgtaaaattcaaggtatgagtactattcgtctc |
10628732 |
T |
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| Q |
353 |
aagatgtt |
360 |
Q |
| |
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|| ||||| |
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| T |
10628733 |
aaaatgtt |
10628740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 360
Target Start/End: Original strand, 17561 - 17706
Alignment:
| Q |
215 |
gtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaaca |
314 |
Q |
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|||||||| || || ||||||||||| | || ||| ||||||||| || || || |||||||| |||| | | ||||| ||||| ||||| || || | |
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| T |
17561 |
gtcttggactctggatgctcttatcacatctgtccgagaaaggagtactttgaaacgttagagctgaaagaaggtggagtagttcgccttgggaataata |
17660 |
T |
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| Q |
315 |
aggcttgaaaagttcaaggtatgtgtaccattcgtctgaagatgtt |
360 |
Q |
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||||||| ||| ||||||||||| |||| || ||||| || ||||| |
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| T |
17661 |
aggcttgtaaaattcaaggtatgggtactatccgtctcaaaatgtt |
17706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 10611722 - 10611601
Alignment:
| Q |
215 |
gtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaaca |
314 |
Q |
| |
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|||||||| || || ||||||||||| | || ||| ||||||||| || || || |||||||| ||| | | ||||| ||||| ||||||||||| | |
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| T |
10611722 |
gtcttggactctgggtgctcttatcacatctgtccgagaaaggagtactttgaaacgttagagctggaagaaggtggagtagttcgccttggaaacaata |
10611623 |
T |
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| Q |
315 |
aggcttgaaaagttcaaggtat |
336 |
Q |
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||||||| ||| |||||||||| |
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| T |
10611622 |
aggcttgtaaaattcaaggtat |
10611601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 16263322 - 16263290
Alignment:
| Q |
150 |
atgaagatggttttgagagtgggggtgcactag |
182 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
16263322 |
atgaagatggttttgagagtgcgggtgcactag |
16263290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 1468 - 1416
Alignment:
| Q |
149 |
gatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc |
201 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
1468 |
gatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc |
1416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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