View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_11 (Length: 516)
Name: NF1140_low_11
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 36408823 - 36409240
Alignment:
| Q |
1 |
gaaataaacaatactgtatggttgattttggaggaatcaatcaaggtccacaaaaatagacccattgatggcatttttatggaggtgggaaatatcagga |
100 |
Q |
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| T |
36408823 |
gaaataaacaatactgtatggttgattttggaggaatcaatcaaggtccacaaaaatagacccattgatggcatttttatggaggtaggaaatatcagga |
36408922 |
T |
|
| Q |
101 |
ggatggaaaaccacacaactatgaaatttagagtcacagaaaatgttgaaagctatactcactaatcatatcacatcaatggatcatttgtatgtatatt |
200 |
Q |
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| T |
36408923 |
ggatggaaaaccacacaactatgaaatttagagtcacagaaaatgttgaaagctatactcactaatcatatcacatcaatggatcatttgtatgtatatt |
36409022 |
T |
|
| Q |
201 |
gctatattaggataaggcaataagagagaggactaaatgagaaccaaacattttcctagaatagaccggaaatgtatcgaatgaatcgaacattcaacct |
300 |
Q |
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| T |
36409023 |
gctatattaggataaggcaataagagagaggactaaatgagaaccaaacattttcctagaatagaccggaaatatatcgaatgaatcgaatattcaacct |
36409122 |
T |
|
| Q |
301 |
tctttttccagtgatgacnnnnnnntcataagtggaagtggtagaattaaaaggcatccatgctttagttactggtttgtggcaattctaatttgaatcc |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36409123 |
tctttttccagtgatgacaaaaaaatcataagtggaagtggtagaattaaaaggcatccatgctttagttactggtttgtggcaattctactttgaatcc |
36409222 |
T |
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| Q |
401 |
ttatcttaatgcagaaag |
418 |
Q |
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| T |
36409223 |
ttatcttaatgcagaaag |
36409240 |
T |
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