View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_13 (Length: 493)

Name: NF1140_low_13
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_13
NF1140_low_13
[»] chr4 (17 HSPs)
chr4 (14-465)||(4011716-4012168)
chr4 (134-465)||(4003237-4003568)
chr4 (127-461)||(3821505-3821839)
chr4 (149-465)||(4026473-4026789)
chr4 (139-465)||(3952844-3953168)
chr4 (127-461)||(3811932-3812266)
chr4 (127-465)||(3915785-3916126)
chr4 (138-461)||(4220743-4221066)
chr4 (183-465)||(3926838-3927120)
chr4 (127-465)||(3988126-3988464)
chr4 (263-461)||(3962360-3962558)
chr4 (241-454)||(4019524-4019737)
chr4 (266-465)||(3825756-3825955)
chr4 (264-392)||(3792676-3792804)
chr4 (288-349)||(4318238-4318299)
chr4 (42-91)||(4026853-4026902)
chr4 (380-461)||(3805793-3805874)
[»] chr5 (1 HSPs)
chr5 (127-465)||(13399078-13399416)
[»] chr8 (4 HSPs)
chr8 (310-403)||(7069945-7070038)
chr8 (309-465)||(7086949-7087105)
chr8 (354-422)||(7035412-7035480)
chr8 (354-422)||(7028710-7028778)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 465
Target Start/End: Complemental strand, 4012168 - 4011716
Alignment:
Q  14 agatatgaatagcatcactttttgataattaagtagtaacatttttt-aattgttgttgtattttgttaatgttatagagatctaagtttttatgaagaa 112  Q
    |||||||||||| ||||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4012168 agatatgaatagaatcactttttgatgattaagtagtaaattttttttaattgttgttgtattttgttaatgttatagagatctaagtttttatgaagaa 4012069  T
Q  113 cctaagnnnnnnngttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttagg 212  Q
    ||||||       ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||     
T  4012068 cctaagttttttcgttcttattgaattgaaggctgtagcagaaaaggcaccgtcaaacatttctccccaatcaaaggatgatgtttttgtaagctttaga 4011969  T
Q  213 ggtgaggacatccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatg 312  Q
    ||||| ||||||||||| ||||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4011968 ggtgaagacatccgccacggattttttggccatttggttatcgcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatg 4011869  T
Q  313 acatatcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaact 412  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4011868 acatgtcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaact 4011769  T
Q  413 tgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4011768 tgcgaaaataattgagtgcaaagagaaatatggacagattgtaatacctgttt 4011716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 134 - 465
Target Start/End: Complemental strand, 4003568 - 4003237
Alignment:
Q  134 taaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatgga 233  Q
    ||||||||||| ||||||||||||||||  |||||||  ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || |||    
T  4003568 taaattgaagggtgtagcagaaaaggcaatgtcaaacgatgctccccaattaaagtatgatgtttttgtaagctttaggggcgaggacatccgtcacgga 4003469  T
Q  234 ttattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttg 333  Q
    ||  || |||||||| |||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||||| |    
T  4003468 tttcttggccatttgattaaagcttttcctcgtaaacaaataaatgcctttgttgacgaaaaacttaagaggggagatgatatatcacatgcacttgtag 4003369  T
Q  334 aagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaa 433  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  4003368 aagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgcaa 4003269  T
Q  434 agagaaatatggacagattgtaatacctgttt 465  Q
    |||||||||||||| ||||||  |||||||||    
T  4003268 agagaaatatggacggattgttttacctgttt 4003237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 127 - 461
Target Start/End: Complemental strand, 3821839 - 3821505
Alignment:
Q  127 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 226  Q
    |||||| ||| ||||||| ||||||||||| || |  | |||||| | |||| |||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  3821839 ttgttaataagttgaagggtgtagcagaaagggaaatgccaaacaatactcctcaattaaagtatgatgtttttgtaagctttaggggcgaggatatccg 3821740  T
Q  227 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattca 326  Q
    |||  | ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  3821739 ccacagctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgacgcacttacgaggggagatgacatatcacattca 3821640  T
Q  327 cttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattg 426  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||| |    
T  3821639 ctttttgaagcaattgaaggatctcccatttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcg 3821540  T
Q  427 attgcaaagagaaatatggacagattgtaatacct 461  Q
    | ||||||||||||||||||||||||||| |||||    
T  3821539 agtgcaaagagaaatatggacagattgtattacct 3821505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 149 - 465
Target Start/End: Complemental strand, 4026789 - 4026473
Alignment:
Q  149 agcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattattttgccatttg 248  Q
    |||||||||||||  ||| |||| |||||| ||| |||||||||||| ||| |||| |||||||||||||||||||||||| || ||  || ||||||||    
T  4026789 agcagaaaaggcaatgtctaacaatgctcctcaaccaaagtatgatgttttcgtaaactttaggggtgaggacatccgccacggctttcttggccatttg 4026690  T
Q  249 gttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggat 348  Q
    | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||| |||||||    
T  4026689 gctaaggctttttctcgaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcgaattcacttgtagaagcaatagaaggat 4026590  T
Q  349 ctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggaca 448  Q
    |   |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  4026589 cattcatttcattgatcatattctcagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaataattgattgcaaagagaaatatggaca 4026490  T
Q  449 gattgtaatacctgttt 465  Q
    |||||||||||||||||    
T  4026489 gattgtaatacctgttt 4026473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 139 - 465
Target Start/End: Original strand, 3952844 - 3953168
Alignment:
Q  139 tgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattatt 238  Q
    |||||| ||||||||||||| ||  |||||||| | ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| || ||  |    
T  3952844 tgaagggtgtagcagaaaagacaatgtcaaacaattctcccgaatcaaagtatgatgtttttgtaagctttaggggagaggacatccgccacggctttct 3952943  T
Q  239 ttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagca 338  Q
    | | ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| || ||||||||    
T  3952944 tggtcatttggctaaggcttttcctcaaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatat--cattcaatttttgaagca 3953041  T
Q  339 attgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagaga 438  Q
    |||||||||||   |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||||    
T  3953042 attgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcagagaga 3953141  T
Q  439 aatatggacagattgtaatacctgttt 465  Q
    || ||||||||||||||||||||||||    
T  3953142 aaaatggacagattgtaatacctgttt 3953168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 127 - 461
Target Start/End: Complemental strand, 3812266 - 3811932
Alignment:
Q  127 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 226  Q
    |||||| ||| ||||||| ||||||||||| || |  | |||||| | |||| |||||||||||||||| |||||||||||||||||| |||||||||||    
T  3812266 ttgttaataagttgaagggtgtagcagaaagggaaatgccaaacaatactcctcaatcaaagtatgatgtttttgtaagctttaggggcgaggacatccg 3812167  T
Q  227 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattca 326  Q
    | |    ||  || ||||||||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3812166 caagttctttcttagccatttggctgaggctttttctcgaaagcaaataaatgcctttcttgatgagaaacttaagaggggagatgacatatcacattca 3812067  T
Q  327 cttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattg 426  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||    
T  3812066 cttgtagaagcaatggaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattg 3811967  T
Q  427 attgcaaagagaaatatggacagattgtaatacct 461  Q
    | |||||||||| |||||||||  |||||||||||    
T  3811966 agtgcaaagagacatatggacattttgtaatacct 3811932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 127 - 465
Target Start/End: Original strand, 3915785 - 3916126
Alignment:
Q  127 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctcccc---aatcaaagtatgatgcttttgtaagctttaggggtgaggacat 223  Q
    |||||| ||||||||||| ||| || |||||| ||  |||||||| | |||| |   | ||||||||||||| ||||||||||||||| ||  |||| ||    
T  3915785 ttgttaataaattgaagggtgttgcggaaaagacaatgtcaaacaatactcctcctcattcaaagtatgatgtttttgtaagctttagtggcaaggaaat 3915884  T
Q  224 ccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacat 323  Q
    |||    || ||  || ||||||||||||||||||||  || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  3915885 ccgtagcggctttcttagccatttggttaaggctttttgtcaaaagcaaataaatgcttttgttgatgacaaacttaagaggggagatgacatatcagat 3915984  T
Q  324 tcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataa 423  Q
    ||||||| ||||||||| ||||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||     
T  3915985 tcacttggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatag 3916084  T
Q  424 ttgattgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    |||| || ||||||||||||| ||| ||||||||||||||||    
T  3916085 ttgagtgtaaagagaaatatgcacaaattgtaatacctgttt 3916126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 138 - 461
Target Start/End: Complemental strand, 4221066 - 4220743
Alignment:
Q  138 ttgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattat 237  Q
    ||||||| || ||||||||| |||  |||||||| | ||||  ||||||||| ||||| ||||||||||||||||||  | ||  ||||| | || ||      
T  4221066 ttgaagggtgcagcagaaaaagcaatgtcaaacaatactcctaaatcaaagtttgatgtttttgtaagctttaggggaaatgatgtccgcgacggctttc 4220967  T
Q  238 tttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagc 337  Q
    || || | |||  | ||||||||  |||||| |||||||||  |||||||||| | ||||||||||  ||||||||||||||||||||||||| ||||||    
T  4220966 ttggcaaattgtatgaggcttttattcgaaaacaaataaatatctttgttgattacaaacttaagaaaggagatgacatatcacattcacttggtgaagc 4220867  T
Q  338 aattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagag 437  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| ||||    
T  4220866 aattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcagagag 4220767  T
Q  438 aaatatggacagattgtaatacct 461  Q
    |||||||||||  |||||||||||    
T  4220766 aaatatggacaacttgtaatacct 4220743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 183 - 465
Target Start/End: Original strand, 3926838 - 3927120
Alignment:
Q  183 tcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcct 282  Q
    ||||||||||||| ||||||||||||||| ||  ||||||| ||     | ||  || ||||||||||||||||||||| || ||||||||||||||| |    
T  3926838 tcaaagtatgatgtttttgtaagctttagtggcaaggacattcgtagcagctttcttagccatttggttaaggcttttcttcaaaagcaaataaatgctt 3926937  T
Q  283 ttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaacta 382  Q
    |||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||  |||||||  ||||||  ||| ||||||| |||||||| ||    
T  3926938 ttgttgatgacaaacttcacaggggagatgacatatcagattcacttgttgaagcaatcaaaggatcatccattttgttgatcatattttcagaaaaata 3927037  T
Q  383 tgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||| || ||||||||||||| ||| ||||||||||| ||||    
T  3927038 tgcttgttcacattggtgtttagaagaacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacccgttt 3927120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 127 - 465
Target Start/End: Complemental strand, 3988464 - 3988126
Alignment:
Q  127 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 226  Q
    |||||| ||| ||||||| ||||| ||||||| ||  ||||| ||  |||||||||||||| ||||||| |||||| |||||||||||  ||||||||||    
T  3988464 ttgttaataagttgaagggtgtaggagaaaagtcaatgtcaaccaacgctccccaatcaaaatatgatgtttttgtgagctttaggggcaaggacatccg 3988365  T
Q  227 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattca 326  Q
      | || ||  || ||||||||||||||||||||| || |||| ||||||||| |||||| ||  | | | |||||||||||||||| ||   |||||||    
T  3988364 agacggctttcttggccatttggttaaggcttttcgtcaaaagaaaataaatgtctttgtagacaacataattaagaggggagatgaaatcaaacattca 3988265  T
Q  327 cttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattg 426  Q
    |||||||||||||||||||| ||    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||| ||||||||| |    
T  3988264 cttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcg 3988165  T
Q  427 attgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    | |||||| || |   |||||||||| ||||||||||||    
T  3988164 agtgcaaaaaggatcgtggacagattataatacctgttt 3988126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 263 - 461
Target Start/End: Original strand, 3962360 - 3962558
Alignment:
Q  263 tcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattg 362  Q
    ||||||| ||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| ||||||||   |||||||||||||||    ||||| |||    
T  3962360 tcgaaagaaaataaaagcctttgtagatgataaacttaagaggggagatgaaataccacaatcacttgtcagagcaattgaaggatcgttaatttccttg 3962459  T
Q  363 gtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacct 461  Q
     ||||||| ||| |  ||||||||||||||  ||||||||||||||||||||  | || | || | |||| |||||||||||||||||| || ||||||    
T  3962460 atcatattttcacacgactatgcttcttcatgttggtgtttagaagaacttgttacaacacttcaatgcagagagaaatatggacagatcgttatacct 3962558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 241 - 454
Target Start/End: Complemental strand, 4019737 - 4019524
Alignment:
Q  241 gccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaat 340  Q
    |||||||| || ||||||| | ||||||| ||||||| ||||||||||||||  | ||||||||||||||||| |||  ||| ||||||||   || |||    
T  4019737 gccatttgattgaggctttacgtcgaaagaaaataaaagcctttgttgatgatgagcttaagaggggagatgaaatactacaatcacttgtcagaggaat 4019638  T
Q  341 tgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaa 440  Q
    |||||||||    ||||| ||| ||||||||||| || |||||||||||||||  |||||||| ||||||||||  | |||| || | |||| |||||||    
T  4019637 tgaaggatcattaatttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaa 4019538  T
Q  441 tatggacagattgt 454  Q
    |||||||| |||||    
T  4019537 tatggacaaattgt 4019524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 266 - 465
Target Start/End: Complemental strand, 3825955 - 3825756
Alignment:
Q  266 aaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattggtc 365  Q
    |||| ||||||| ||||||||||||||  ||||||||||||||||||| ||| |||| ||||||||   || || |||||||||    ||||| ||| ||    
T  3825955 aaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatc 3825856  T
Q  366 atattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    ||||||||| || ||||||||||||||  ||||||||||||||||| ||  | ||||  | | |||| ||||||||||||||| ||||| ||||||||||    
T  3825855 atattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtcacaatacgtcaatgcagagagaaatatggacaaattgttatacctgttt 3825756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 3792804 - 3792676
Alignment:
Q  264 cgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattgg 363  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||||||| ||| |||| ||||||||   || || |||||||||    ||||| |||     
T  3792804 cgaaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttga 3792705  T
Q  364 tcatattctcagaaaactatgcttcttca 392  Q
    ||||||||||| || ||||||||||||||    
T  3792704 tcatattctcacaagactatgcttcttca 3792676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 4318238 - 4318299
Alignment:
Q  288 gatgagaaacttaagaggggagatgacatatcacattcacttgttgaagcaattgaaggatc 349  Q
    ||||| || ||||||||||| ||||| |||||||||||| |||||||||||||| |||||||    
T  4318238 gatgacaagcttaagaggggggatgaaatatcacattcatttgttgaagcaattaaaggatc 4318299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 4026902 - 4026853
Alignment:
Q  42 ttaagtagtaacattttttaattgttgttgtattttgttaatgttataga 91  Q
    |||||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  4026902 ttaagtagtaacatttattaaattttgctgtattttgttaatgttataga 4026853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 3805874 - 3805793
Alignment:
Q  380 ctatgcttcttcacattggtgtttagaagaacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacct 461  Q
    |||||||||||||  ||||||||| || |||||||  | |||| || | |||| | ||||||||||||||||||| ||||||    
T  3805874 ctatgcttcttcatgttggtgtttggacgaacttgtcacaatacttcaatgcagaaagaaatatggacagattgttatacct 3805793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 127 - 465
Target Start/End: Complemental strand, 13399416 - 13399078
Alignment:
Q  127 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 226  Q
    |||||| ||| ||||||| | |||| ||||| |||  |||||  | ||||||||||||||  || |||| |||||||||||||||||||||||||||||     
T  13399416 ttgttaataagttgaagggtatagctgaaaaagcagtgtcaagaaatgctccccaatcaatatacgatgtttttgtaagctttaggggtgaggacatcca 13399317  T
Q  227 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattca 326  Q
    ||| || ||  || |||||||| ||||||||||| ||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||    
T  13399316 ccacggctttcttggccatttgtttaaggctttttctcaaaagcaaataaatgtctttgttgacgacaaacttaagaggggaaatgacatatcacattca 13399217  T
Q  327 cttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaataattg 426  Q
    ||| |||||||||| ||||||||    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  13399216 ctttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattg 13399117  T
Q  427 attgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    | |||||||||||||||||||| ||||||||||||||||    
T  13399116 agtgcaaagagaaatatggacaaattgtaatacctgttt 13399078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 7070038 - 7069945
Alignment:
Q  310 atgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgttt 403  Q
    |||| |||||||| |||||| ||||||||||||||  |||| | |||||||| |||||||||||  |||||||||||||||||  |||||||||    
T  7070038 atgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgttt 7069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 465
Target Start/End: Complemental strand, 7087105 - 7086949
Alignment:
Q  309 gatgacatatcacattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaag 408  Q
    ||||| ||| |||| |||||| ||||||| ||||||  |||| | |||||||| |||||||||||  ||||||||||||||||| | |||||||| || |    
T  7087105 gatgaaatagcacaatcactttttgaagctattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatg 7087006  T
Q  409 aacttgcgaaaataattgattgcaaagagaaatatggacagattgtaatacctgttt 465  Q
    | ||||  |||||  |||| || | ||||||| ||||||||||| || | |||||||    
T  7087005 agcttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgttt 7086949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 7035412 - 7035480
Alignment:
Q  354 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaata 422  Q
    ||||||||||||||||| |||  ||||| ||| ||||||||||||||||| || || |||| |||||||    
T  7035412 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaata 7035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 7028710 - 7028778
Alignment:
Q  354 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgcgaaaata 422  Q
    ||||||||||||||||| ||   ||||| ||| ||||||||||||||||| || || |||| |||||||    
T  7028710 atttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaata 7028778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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