View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_14 (Length: 460)
Name: NF1140_low_14
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 8766327 - 8765971
Alignment:
| Q |
18 |
aagaatatatatgtttacatttgaagaaatttgatcaataaaactcaaccaagttgtagaagtgnnnnnnnaaaggttgtaaaagtgttttcatatcact |
117 |
Q |
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| T |
8766327 |
aagaatatatatgtttacatttgaagaaatttgatcaataaaactcaaccaagttgtagaagtgtttttttaaaggttgtaaaagtgttttcatatcact |
8766228 |
T |
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| Q |
118 |
tttctagttcaaatcaacaatgtcatgtcatttaatgtacttccacattataaagtatgggccaaacacacaaatcaaacttaaaaataacggagattgc |
217 |
Q |
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| T |
8766227 |
tttctagttcaaatcaacaatgtcatgtcatttaatgtacttccacattataaagaatgggccaaacacacaatt-aaacttaaaaataacggagattgc |
8766129 |
T |
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| Q |
218 |
aatacaaaccatgatcacatcaattttagaatttgaatatttagtataatttagtttcacaaaactagctcgagtgatagatgtctcttaagtcttaaca |
317 |
Q |
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| T |
8766128 |
aatacaaaccatgatcacatcaattttagaatttgaatatttagtataatttagtttcacaaaactagctcgagtgatagatgtctcttaagtcttaaca |
8766029 |
T |
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| Q |
318 |
cattaccacatgtttaggagttaggttttcatatctagagggttatccaagtgtaatg |
375 |
Q |
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| T |
8766028 |
cattaccacatgtttaggagttaggttttcatatctagagggttatccaagtgtaatg |
8765971 |
T |
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